Strategy for modeling higher-order G-quadruplex structures recalcitrant to NMR determination

Authors: Michael Sabo, T., Trent, John O., Chaires, Jonathan B., Monsen, Robert C.

Source: In Methods October 2024 230:9-20

Supramolecular DNA-based catalysis in organic solvents

Authors: Chakraborty, Gurudas ^{1, 2}, Balinin, Konstantin ^{1, 2, 3}, Villar-Guerra, Rafael del ⁴, Emondts, Meike ^{2, 5}, Portale, Giuseppe ¹, Loznik, Mark ^{1, 2}, Niels Klement, Wiebe Jacob ¹, Zheng, Lifei ², Weil, Tanja ³, Chaires, Jonathan B. ⁴, Herrmann, Andreas ^{1, 2, 5, 6, ∗}

Source: In iScience 17 May 2024 27(5)

G-quadruplex DNA: A Longer Story

Authors: Monsen, Robert C., Trent, John O., Chaires, Jonathan B.

Source: Accounts of chemical research. 55(22):3242-3252

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631199419&indx=1&recIds=ETOCRN631199419

Early events in G-quadruplex folding captured by time-resolved small-angle X-ray scattering.

Authors: Monsen, Robert C, Sabo, T Michael, Gray, Robert, Hopkins, Jesse B, Chaires, Jonathan B

Source: Nucleic Acids Research; 2/10/2025, Vol. 53 Issue 3, p1-12, 12p

Interaction of N-methylmesoporphyrin IX with a hybrid left-/right-handed G-quadruplex motif from the promoter of the SLC2A1 gene.

Authors: Seth, Paul, Xing, Eric, Hendrickson, Andrew D, Li, Kevin, Monsen, Robert, Chaires, Jonathan B, Neidle, Stephen, Yatsunyk, Liliya A

Source: Nucleic Acids Research; 1/27/2025, Vol. 53 Issue 2, p1-14, 14p

Evaluation of Thermal Liquid Biopsy Analysis of Saliva and Blood Plasma Specimens as a Novel Diagnostic Modality in Head and Neck Cancer.

Authors: Schneider, Gabriela, Kaliappan, Alagammai, Joos, Nathan, Dooley, Laura M., Shumway, Brian S., Chaires, Jonathan B., Zacharias, Wolfgang, Bumpous, Jeffrey M., Garbett, Nichola C.

Source: Cancers; Dec2024, Vol. 16 Issue 24, p4220, 23p

Subject Terms: HEAD & neck cancer diagnosis, SALIVA analysis, PROTEINS, MEDICAL thermography, RESEARCH funding, CENTRIFUGATION, BODY fluid examination, DESCRIPTIVE statistics, CANCER patients, TUMOR markers, BLOOD plasma, COLLECTION & preservation of biological specimens, COMPARATIVE studies, CALORIMETRY

Putting a New Spin of G-Quadruplex Structure and Binding by Analytical Ultracentrifugation

Authors: Dean, William L., Gray, Robert D., DeLeeuw, Lynn, Monsen, Robert C., Chaires, Jonathan B.

Source: Methods in molecular biology. 2035:87-104

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN621336300&indx=1&recIds=ETOCRN621336300

Allosteric, Chiral-Selective Drug Binding to DNA

Authors: Qu, Xiaogang, Trent, John O., Fokt, Izabela, Priebe, Waldemar, Chaires, Jonathan B.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2000 Oct . 97(22), 12032-12037.

Access URL: https://www.jstor.org/stable/123785

Clinical application of plasma thermograms. Utility, practical approaches and considerations

Authors: Garbett, Nichola C., Mekmaysy, Chongkham S., DeLeeuw, Lynn, Chaires, Jonathan B.

Source: In Methods 1 April 2015 76:41-50

Characterization of Quadruplex DNA Structure by Circular Dichroism

Authors: del Villar‐Guerra, Rafael, Gray, Robert D., Chaires, Jonathan B.

Source: Current protocols in nucleic acid chemistry. 68(1):17.8.1-17.8.16

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100111790656.0x000001&indx=1&recIds=ETOCvdc_100111790656.0x000001

Folding and Unfolding Pathways of the Human Telomeric G-Quadruplex

Authors: Gray, Robert D., Trent, John O., Chaires, Jonathan B.

Source: In Journal of Molecular Biology 17 April 2014 426(8):1629-1650

Calorimetric analysis of the plasma proteome: Identification of type 1 diabetes patients with early renal function decline

Authors: Garbett, Nichola C., Merchant, Michael L., Chaires, Jonathan B., Klein, Jon B.

Source: In BBA - General Subjects October 2013 1830(10):4675-4680

Modeling complex equilibria in isothermal titration calorimetry experiments: Thermodynamic parameters estimation for a three-binding-site model

Authors: Le, Vu H., Buscaglia, Robert, Chaires, Jonathan B., Lewis, Edwin A.

Source: In Analytical Biochemistry 15 March 2013 434(2):233-241

Isothermal folding of G-quadruplexes

Authors: Gray, Robert D., Chaires, Jonathan B.

Source: In Methods May 2012 57(1):47-55

Linkage of cation binding and folding in human telomeric quadruplex DNA

Authors: Gray, Robert D., Chaires, Jonathan B.

Source: In Biophysical Chemistry 2011 159(1):205-209

Thermodynamic studies for drug design and screening

Authors: Garbett, Nichola C, Chaires, Jonathan B

Source: Expert opinion on drug discovery. 7(4):299-314

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100102978661.0x000001&indx=1&recIds=ETOCvdc_100102978661.0x000001

Statistical analysis of plasma thermograms measured by differential scanning calorimetry

Authors: Fish, Daniel J., Brewood, Greg P., Kim, Jong Sung, Garbett, Nichola C., Chaires, Jonathan B., Benight, Albert S.

Source: In Biophysical Chemistry 2010 152(1):184-190

Differential scanning calorimetry of blood plasma for clinical diagnosis and monitoring

Authors: Garbett, Nichola C., Mekmaysy, Chongkham S., Helm, C. William, Jenson, A. Bennett, Chaires, Jonathan B. ^⁎

Source: In Experimental and Molecular Pathology 2009 86(3):186-191

Structure of a 28.5 kDa duplex-embedded G-quadruplex system resolved to 7.4 Å resolution with cryo-EM.

Authors: Monsen, Robert C, Chua, Eugene Y D, Hopkins, Jesse B, Chaires, Jonathan B, Trent, John O

Source: Nucleic Acids Research; 2/28/2023, Vol. 51 Issue 4, p1943-1959, 17p

Thermodynamics of the B to Z Transition in poly(m5dG-dC)

Authors: Chaires, Jonathan B., Sturtevant, Julian M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 1986 Aug 01. 83(15), 5479-5483.

Access URL: https://www.jstor.org/stable/27662