Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity

Authors: Siavash Raeisi Dehkordi, Ivy Tsz-Lo Wong, Jing Ni, Jens Luebeck, Kaiyuan Zhu, Gino Prasad, Lena Krockenberger, Guanghui Xu, Biswanath Chowdhury, Utkrisht Rajkumar, Ann Caplin, Daniel Muliaditan, Aditi Gnanasekar, Ceyda Coruh, Qiushi Jin, Kristen Turner, Shu Xian Teo, Andy Wing Chun Pang, Ludmil B. Alexandrov, Christelle En Lin Chua, Frank B. Furnari, John Maciejowski, Thomas G. Paulson, Julie A. Law, Howard Y. Chang, Feng Yue, Ramanuj DasGupta, Jean Zhao, Paul S. Mischel, Vineet Bafna

Source: Nature Communications, Vol 16, Iss 1, Pp 1-19 (2025)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/28ab681fa4874eb3bce2a7057a8663c4

CLSY docking to Pol IV requires a conserved domain critical for small RNA biogenesis and transposon silencing

Authors: Luisa Felgines, Bart Rymen, Laura M. Martins, Guanghui Xu, Calvin Matteoli, Christophe Himber, Ming Zhou, Josh Eis, Ceyda Coruh, Marcel Böhrer, Lauriane Kuhn, Johana Chicher, Vijaya Pandey, Philippe Hammann, James Wohlschlegel, Florent Waltz, Julie A. Law, Todd Blevins

Source: Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e8bc24794bde4fd99cb9297cd2c4e890

Plasma cell-free DNA hydroxymethylation profiling reveals anti-PD-1 treatment response and resistance biology in non-small cell lung cancer

Authors: Aaron Scott, Samuel Levy, Wayne Volkmuth, Yuhong Ning, Ceyda Coruh, Tierney Phillips, Kyle Hazen, Gulfem D Guler, Giuliana P Mognol, Maryam Nabiyouni

Source: Journal for ImmunoTherapy of Cancer, Vol 12, Iss 1 (2024)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://jitc.bmj.com/content/12/1/e008028.full; https://doaj.org/toc/2051-1426

Access URL: https://doaj.org/article/b147ca642587424f9492b1842c0275dc

The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis

Authors: Ming Zhou, Ceyda Coruh, Guanghui Xu, Laura M. Martins, Clara Bourbousse, Alice Lambolez, Julie A. Law

Source: Nature Communications, Vol 13, Iss 1, Pp 1-16 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/68f62fa814b640db9b4b286adb30c97f

AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications

Authors: Jens Luebeck, Ceyda Coruh, Siavash R. Dehkordi, Joshua T. Lange, Kristen M. Turner, Viraj Deshpande, Dave A. Pai, Chao Zhang, Utkrisht Rajkumar, Julie A. Law, Paul S. Mischel, Vineet Bafna

Source: Nature Communications, Vol 11, Iss 1, Pp 1-14 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/f072105319bb4cc08d37a2a5027abc98

Improved Placement of Multi-mapping Small RNAs

Authors: Nathan R. Johnson, Jonathan M. Yeoh, Ceyda Coruh, Michael J. Axtell

Source: G3: Genes, Genomes, Genetics, Vol 6, Iss 7, Pp 2103-2111 (2016)

Subject Terms: alignment, annotation, sRNA-seq, siRNA, miRNA, bioinformatics, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2160-1836

Access URL: https://doaj.org/article/96d458036a07405683a38c262e8de20f

Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development.

Authors: Sung Hyun Cho, Charles Addo-Quaye, Ceyda Coruh, M Asif Arif, Zhaorong Ma, Wolfgang Frank, Michael J Axtell

Source: PLoS Genetics, Vol 4, Iss 12, p e1000314 (2008)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2600652?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/56440ea1a75f489b82ef698c88ea69ba