Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators

Authors: Xueyang Dong, Ben G. H. Guthrie, Margaret Alexander, Cecilia Noecker, Lorenzo Ramirez, Nathaniel R. Glasser, Peter J. Turnbaugh, Emily P. Balskus

Source: Nature Communications, Vol 13, Iss 1, Pp 1-20 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/dacfef5b511343078382025ccb8ee164

Mild SARS-CoV-2 infection results in long-lasting microbiota instability

Authors: Vaibhav Upadhyay, Rahul K. Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, Renuka G. Kumar, Victoria Wong Murray, Cecilia Noecker, Jordan E. Bisanz, Yulin Hswen, Connie W. Y. Ha, Bharath Sreekumar, Irene P. Chen, Susan V. Lynch, Melanie Ott, Sulggi Lee, Peter J. Turnbaugh

Source: mBio, Vol 14, Iss 4 (2023)

Subject Terms: COVID-19, SARS-CoV-2, non-hospitalized patients, human gut microbiome, gastrointestinal symptoms, microbial ecology, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/a45091a010d74e58ac18fab5c99276e3

Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta.

Authors: Cecilia Noecker, Juan Sanchez, Jordan E Bisanz, Veronica Escalante, Margaret Alexander, Kai Trepka, Almut Heinken, Yuanyuan Liu, Dylan Dodd, Ines Thiele, Brian C DeFelice, Peter J Turnbaugh

Source: PLoS Biology, Vol 21, Iss 5, p e3002125 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/4aca52c64575452cb35fdf8e9432cf85

The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health

Authors: Qi Yan Ang, Diana L Alba, Vaibhav Upadhyay, Jordan E Bisanz, Jingwei Cai, Ho Lim Lee, Eliseo Barajas, Grace Wei, Cecilia Noecker, Andrew D Patterson, Suneil K Koliwad, Peter J Turnbaugh

Source: eLife, Vol 10 (2021)

Subject Terms: human gut microbiome, ethnicity, multi-omics, metabolic syndrome, obesity, biogeography, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/70349; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/83d0bc1c7af04b4c88d291ca551b57b2

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies

Authors: Cecilia Noecker, Hsuan-Chao Chiu, Colin P. McNally, Elhanan Borenstein

Source: mSystems, Vol 4, Iss 6 (2019)

Subject Terms: correlation, evaluation, metabolic modeling, metabolomics, microbiome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/ed19ccfc5f994f1db0463cb9975f1f52

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies

Authors: Cecilia Noecker, Hsuan-Chao Chiu, Colin P. McNally, Elhanan Borenstein

Source: mSystems, Vol 4, Iss 6 (2019)

Subject Terms: correlation, evaluation, metabolic modeling, metabolomics, microbiome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/be7f9121d3c542c590e9c8ede0374e1e

The Skin Microbiome of the Neotropical Frog Craugastor fitzingeri: Inferring Potential Bacterial-Host-Pathogen Interactions From Metagenomic Data

Authors: Eria A. Rebollar, Ana Gutiérrez-Preciado, Cecilia Noecker, Alexander Eng, Myra C. Hughey, Daniel Medina, Jenifer B. Walke, Elhanan Borenstein, Roderick V. Jensen, Lisa K. Belden, Reid N. Harris

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: skin microbiome, shotgun metagenomics, host-bacteria interactions, amphibians, Batrachochytrium dendrobatidis, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fmicb.2018.00466/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/e4b4e600519846e2b16042b0951694e5

BURRITO: An Interactive Multi-Omic Tool for Visualizing Taxa–Function Relationships in Microbiome Data

Authors: Colin P. McNally, Alexander Eng, Cecilia Noecker, William C. Gagne-Maynard, Elhanan Borenstein

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: microbiome, metagenomics, data visualization, taxonomy, function, web interface, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fmicb.2018.00365/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/9f05b206c08f44829b0fee8c9ccc5363

Simple Mathematical Models Do Not Accurately Predict Early SIV Dynamics

Authors: Cecilia Noecker, Krista Schaefer, Kelly Zaccheo, Yiding Yang, Judy Day, Vitaly V. Ganusov

Source: Viruses, Vol 7, Iss 3, Pp 1189-1217 (2015)

Subject Terms: early SIV/HIV infection, mathematical model, eclipse phase, stochastic, Gillespie algorithm, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.mdpi.com/1999-4915/7/3/1189; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/0ed733fa43a14c30bf4af4e9af7fc381

Microbiome sharing between children, livestock and household surfaces in western Kenya.

Authors: Emily Mosites, Matt Sammons, Elkanah Otiang, Alexander Eng, Cecilia Noecker, Ohad Manor, Sarah Hilton, Samuel M Thumbi, Clayton Onyango, Gemina Garland-Lewis, Douglas R Call, M Kariuki Njenga, Judith N Wasserheit, Jennifer A Zambriski, Judd L Walson, Guy H Palmer, Joel Montgomery, Elhanan Borenstein, Richard Omore, Peter M Rabinowitz

Source: PLoS ONE, Vol 12, Iss 2, p e0171017 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0171017&type=printable; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/6667bb1d4f0841b59bdb441797627f69

Characterising the taxonomic composition of children and livestock gut microbiomes and of environmental samples and the potential role for household-level microbiome sharing in western Kenya

Authors: Emily Mosites, PhD, Thumbi Mwangi, DVM, Elkanah Otiang, BVM, Gemina Garland-Lewis, MS, Matt Sammons, BS, Clayton Onyango, PhD, Alexander Eng, BS, Cecilia Noecker, BA, Ohad Manor, PhD, Sarah Hilton, BS, Doug Call, PhD, Njenga Kariuki, DVM, Jennifer Zambriski, DVM, Judith Wasserheit, MD, Judd Walson, MD, Guy Palmer, DVM, Joel Montgomery, PhD, Elhanan Borenstein, PhD, Richard Omore, MCHD, Peter Rabinowitz, MD

Source: The Lancet Global Health, Vol 4, Iss S1, p S20 (2016)

Subject Terms: Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2214109X16300250; https://doaj.org/toc/2214-109X

Access URL: https://doaj.org/article/f0a3c2447cbf470d85ec7cca6c42d9a7

Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation

Authors: Cecilia Noecker, Alexander Eng, Sujatha Srinivasan, Casey M. Theriot, Vincent B. Young, Janet K. Jansson, David N. Fredricks, Elhanan Borenstein

Source: mSystems, Vol 1, Iss 1 (2016)

Subject Terms: microbiome, multi-omic, metabolic modeling, community composition, metabolomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/4d9c5fc6a9614d14bf70f9ef1be00faf