Complete genome sequence analysis of Pestalotiopsis microspora, a fungal pathogen causing kiwifruit postharvest rots

Authors: Lei Deng, Xufang Qiu, Qiya Su, Hui Pan, Zupeng Wang, Guoliang Qian, Pu Liu, Dejiang Liu, Xiujun Zhang, Caihong Zhong, Li Li

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-17 (2024)

Subject Terms: Kiwifruit, Postharvest rot, Pathogenic fungi, Pestalotiopsis microspora, Genome sequence analysis, CAZy genes, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/ec22f1a3c2384e20bddb7acd0e895d74

Comparative genomics of Aspergillus nidulans and section Nidulantes

Authors: Sebastian Theobald, Tammi Vesth, Jane L. Nybo, Jens C. Frisvad, Inge Kjærbølling, Stephen Mondo, Kurt LaButti, Sajeet Haridas, Robert Riley, Alan A. Kuo, Asaf A. Salamov, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Mi Yan, Kerrie Barry, Alicia Clum, Ellen K. Lyhne, Elodie Drula, Ad Wiebenga, Astrid Müller, Ronnie J.M. Lubbers, Roland S. Kun, Ana Carolina dos Santos Gomes, Miia R. Mäkelä, Bernard Henrissat, Blake A. Simmons, Jon K. Magnuson, Jakob B. Hoof, Uffe H. Mortensen, Paul S. Dyer, Michelle Momany, Thomas O. Larsen, Igor V Grigoriev, Scott E. Baker, Ronald P. de Vries, Mikael R. Andersen

Source: Current Research in Microbial Sciences, Vol 8, Iss , Pp 100342- (2025)

Subject Terms: Aspergillus, Comparative genomics, Nidulantes, Secondary metabolism, CAZy, Microbiology, QR1-502, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666517425000045; https://doaj.org/toc/2666-5174

Access URL: https://doaj.org/article/08c1d05a8154446ba1779a8af0da9892

Effects of polyethylene microplastics on soil microbial assembly and ecosystem multifunctionality in the remote mountain: Altitude matters

Authors: Zhang, Zhiyu ^{a, b, c}, Gao, Jie ^{a, b, c}, Guan, En ^{a, b, d}, Yao, Xiaochen ^{a, b, c}, Wang, Wenfeng ^{a, b, ⁎}, Zhang, Zhongsheng ^{a, b}, Wu, Haitao ^{a, b, ⁎}

Source: In Journal of Hazardous Materials 5 August 2025 493

Shotgun Metagenomics Reveals Metabolic Potential and Functional Diversity of Microbial Communities of Chitu and Shala Soda Lakes in Ethiopia

Authors: Gessesse Kebede Bekele, Ebrahim M. Abda, Fassil Assefa Tuji, Abu Feyisa Meka, Mesfin Tafesse Gemeda

Source: Microbiology Research, Vol 16, Iss 3, p 71 (2025)

Subject Terms: CAZy, eggNOG, taxonomic annotation, functional annotation, KEGG, soda lakes, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2036-7481/16/3/71; https://doaj.org/toc/2036-7481

Access URL: https://doaj.org/article/799de6f072fd44598132d2a81379ab20

CAZyme3D: A Database of 3D Structures for Carbohydrate-active Enzymes

Authors: Siva Shanmugam, N.R., Yin, Yanbin ^⁎

Source: In Journal of Molecular Biology February 2025

Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases

Authors: Hongbo Zhao, Johanna Karppi, Owen Mototsune, Daria Poshina, Jenny Svartström, Thi Truc Minh Nguyen, Tri Minh Vo, Adrian Tsang, Emma Master, Maija Tenkanen

Source: Biotechnology for Biofuels and Bioproducts, Vol 17, Iss 1, Pp 1-22 (2024)

Subject Terms: CAZy family AA3_2, Gentiobiose, Oxidoreductase, Phenoxy radical, Sequence similarity network, Biotechnology, TP248.13-248.65, Fuel, TP315-360

File Description: electronic resource

Relation: https://doaj.org/toc/2731-3654

Access URL: https://doaj.org/article/642799862ad24db89d9e656c9afb1c3d

Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus

Authors: Luiz Marcelo Ribeiro Tomé, Gabriel Quintanilha-Peixoto, Diogo Henrique Costa-Rezende, Carlos A. Salvador-Montoya, Domingos Cardoso, Daniel S. Araújo, Jorge Marcelo Freitas, Gabriela Bielefeld Nardoto, Genivaldo Alves-Silva, Elisandro Ricardo Drechsler-Santos, Aristóteles Góes-Neto

Source: mBio, Vol 15, Iss 8 (2024)

Subject Terms: fungus-plant interactions, Hymenochaetaceae, Fabaceae, CAZy, C13/N15 stable isotopes, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/182ff67b36de40f79215ce54707d1c76

Microbial mechanism of soil carbon emission reduction in maize-pea intercropping system with no tillage in arid land areas of northwestern China

Authors: Qi-ming Wang, Qiang Chai, Xue-cheng Dou, Wen Yin, Ya-li Sun, Fa-long Hu, Han-ting Li, Zhi-peng Liu, Jin-gui Wei, Xiao-hui Xu

Source: Frontiers in Sustainable Food Systems, Vol 8 (2024)

Subject Terms: soil carbon emissions, soil microorganism, intercropping, functional gene, Cazy, Nutrition. Foods and food supply, TX341-641, Food processing and manufacture, TP368-456

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fsufs.2024.1415264/full; https://doaj.org/toc/2571-581X

Access URL: https://doaj.org/article/44f9a027aa2743299bc81252c8ac5f92

Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study

Authors: Yanfang Wang, Diego Javier Jiménez, Zhenhua Zhang, Jan Dirk van Elsas

Source: Biotechnology for Biofuels and Bioproducts, Vol 16, Iss 1, Pp 1-20 (2023)

Subject Terms: Lignocellulose, Degradation, Metatranscriptome, Bacterial–fungal consortium, Microbial interactions, CAZy, Biotechnology, TP248.13-248.65, Fuel, TP315-360

File Description: electronic resource

Relation: https://doaj.org/toc/2731-3654

Access URL: https://doaj.org/article/a094d57a5af043a1a25e38e85482200c

Characterization of a novel AA3_1 xylooligosaccharide dehydrogenase from Thermothelomyces myriococcoides CBS 398.93

Authors: Hongbo Zhao, Johanna Karppi, Thi Truc Minh Nguyen, Annie Bellemare, Adrian Tsang, Emma Master, Maija Tenkanen

Source: Biotechnology for Biofuels and Bioproducts, Vol 15, Iss 1, Pp 1-17 (2022)

Subject Terms: Xylooligosaccharide dehydrogenase, Cellobiose dehydrogenase, Thermothelomyces myriococcoides, CAZy AA3, AA3_1, Biotechnology, TP248.13-248.65, Fuel, TP315-360

File Description: electronic resource

Relation: https://doaj.org/toc/2731-3654

Access URL: https://doaj.org/article/dc721cbeb43840adbb4c0b5f2ef156d3

The supragenic organization of glycoside hydrolase encoding genes reveals distinct strategies for carbohydrate utilization in bacteria

Authors: Renaud Berlemont

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: glycoside hydrolase, cellulase, CAZy, genomics, polysaccharide utilization, gene cluster, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1179206/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/c72ce0900c174e9785c6a5cb12bc5e9e

Abundance and composition of particles and their attached microbiomes along an Atlantic Meridional Transect

Authors: Greta Reintjes, Anneke Heins, Cheng Wang, Rudolf Amann

Source: Frontiers in Marine Science, Vol 10 (2023)

Subject Terms: MAGs: metagenome assembled genomes (MAGs), particle-attached and free-living microbes, particle composition, fucose-containing polysaccharide, CAZy (carbohydrate-active enzymes), bacterial cell abundance, Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmars.2023.1051510/full; https://doaj.org/toc/2296-7745

Access URL: https://doaj.org/article/52989795c1d34cf7a072da113efdcdd6

Unveiling the Wheat Microbiome under Varied Agricultural Field Conditions

Authors: Sarika Jaiswal, Bharti Aneja, Jaisri Jagannadham, Bharati Pandey, Rajender Singh Chhokar, Subhash Chander Gill, Om Parkash Ahlawat, Anuj Kumar, U. B. Angadi, Anil Rai, Ratan Tiwari, Mir Asif Iquebal, Dinesh Kumar

Source: Microbiology Spectrum, Vol 10, Iss 6 (2022)

Subject Terms: wheat, 16S rRNA, metagenomics, microbiome, CAZy, microbial diversity, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/81aeb28564fb4a0999c1c1e9eb8d8fb8

CAZymes from the thermophilic fungus Thermoascus aurantiacus are induced by C5 and C6 sugars

Authors: Raphael Gabriel, Rebecca Mueller, Lena Floerl, Cynthia Hopson, Simon Harth, Timo Schuerg, Andre Fleissner, Steven W. Singer

Source: Biotechnology for Biofuels, Vol 14, Iss 1, Pp 1-13 (2021)

Subject Terms: CAZy, Filamentous fungi, Thermoascus aurantiacus, Transcriptomics, Cellulase gene expression, Fuel, TP315-360, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/1754-6834

Access URL: https://doaj.org/article/1d4230358f564ff48e42ef95cdd6a715

Long-term mercury contamination does not affect the microbial gene potential for C and N cycling in soils but enhances detoxification gene abundance

Authors: Beat Frey, Basil M. Rast, Weihong Qi, Beat Stierli, Ivano Brunner

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: shotgun metagenomics, mercury, mer genes, hgcAB genes, biogeochemical cycling, CAZy (carbohydrate-active enzymes), Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.1034138/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/ee4fdc68cf4044538668e892b1a54c5d

Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

Contributors: Archer, David [Univ. of Nottingham, Nottingham (United Kingdom)]

Source: Biotechnology for Biofuels; 10; 1

File Description: Medium: ED; Size: 21 p.

Access URL: http://www.osti.gov/scitech/servlets/purl/1379724

Shotgun Metagenomics of Deep Forest Soil Layers Show Evidence of Altered Microbial Genetic Potential for Biogeochemical Cycling

Authors: Beat Frey, Gilda Varliero, Weihong Qi, Beat Stierli, Lorenz Walthert, Ivano Brunner

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: forest, C and N cycles, CAZy, subsoil, metagenomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.828977/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/067c47cb390343c2843a76f267a476a8

CAZymes-based ranking of fungi (CBRF): an interactive web database for identifying fungi with extrinsic plant biomass degrading abilities

Authors: Ayyappa Kumar Sista Kameshwar, Luiz Pereira Ramos, Wensheng Qin

Source: Bioresources and Bioprocessing, Vol 6, Iss 1, Pp 1-10 (2019)

Subject Terms: Carbohydrate-active enzymes (CAZy), Wood-decaying fungi, Plant biomass, Lignocellulose, JGI-MycoCosm, Technology, Chemical technology, TP1-1185, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/2197-4365

Access URL: https://doaj.org/article/665c9d6dae9c4c89828591497ff4ff0c

Insights into the Lignocellulose-Degrading Enzyme System of Humicola grisea var. thermoidea Based on Genome and Transcriptome Analysis

Authors: Andrei Stecca Steindorff, Luana Assis Serra, Eduardo Fernandes Formighieri, Fabrícia Paula de Faria, Marcio José Poças-Fonseca, João Ricardo Moreira de Almeida

Source: Microbiology Spectrum, Vol 9, Iss 2 (2021)

Subject Terms: Humicola grisea, genome sequencing, transcriptome, sugarcane bagasse, pH regulation, CAZy enzymes, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/7c484e7b077b4977b707ba58fe09f6f6

Corrigendum: Diversity of Weissella confusa in Pozol and Its Carbohydrate Metabolism

Authors: Diana Hernández-Oaxaca, Rafael López-Sánchez, Luis Lozano, Carmen Wacher-Rodarte, Lorenzo Segovia, Agustín López Munguía

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: pozol, maize, Weissella, fermented foods, CAZy, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.683050/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/c46b853f1c484e2c9b4d46eb06548c80