Comprehensive Proteomics Analysis of Polyhydroxyalkanoate (PHA) Biology in Pseudomonas putida KT2440: The Outer Membrane Lipoprotein OprL is a Newly Identified Phasin

Authors: Kelly, Siobhan, Tham, Jia-Lynn, McKeever, Kate, Dillon, Eugene, O’Connell, David, Scholz, Dimitri, Simpson, Jeremy C., O’Connor, Kevin, Narancic, Tanja, Cagney, Gerard

Source: In Molecular & Cellular Proteomics May 2024 23(5)

Differential expression of haptoglobin in individuals at clinical high risk of psychosis and its association with global functioning and clinical symptoms

Authors: Healy, Colm, Byrne, Jonah, Raj Suasi, Subash, Föcking, Melanie, Mongan, David, Kodosaki, Eleftheria, Heurich, Meike, Cagney, Gerard, Wynne, Kieran, Bearden, Carrie E., Woods, Scott W., Cornblatt, Barbara, Mathalon, Daniel, Stone, William, Cannon, Tyrone D., Addington, Jean, Cadenhead, Kristin S., Perkins, Diana, Jeffries, Clark, Cotter, David

Source: In Brain Behavior and Immunity March 2024 117:175-180

Machine learning based prediction and the influence of complement – Coagulation pathway proteins on clinical outcome: Results from the NEURAPRO trial

Authors: Susai, Subash Raj, Mongan, David, Healy, Colm, Cannon, Mary, Cagney, Gerard, Wynne, Kieran, Byrne, Jonah F., Markulev, Connie, Schäfer, Miriam R., Berger, Maximus, Mossaheb, Nilufar, Schlögelhofer, Monika, Smesny, Stefan, Hickie, Ian B., Berger, Gregor E., Chen, Eric Y.H., de Haan, Lieuwe, Nieman, Dorien H., Nordentoft, Merete, Riecher-Rössler, Anita, Verma, Swapna, Street, Rebekah, Thompson, Andrew, Ruth Yung, Alison, Nelson, Barnaby, McGorry, Patrick D., Föcking, Melanie, Paul Amminger, G., Cotter, David

Source: Brain behavior and immunity. 103:50-60

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164941760.0x000001&indx=1&recIds=ETOCvdc_100164941760.0x000001

Motif mapping during chickpea germination reveals a complex sequential activation of different proteolytic activities.

Authors: Bera, Indrani, O'Sullivan, Michael, Scaife, Caitriona, Cagney, Gerard, Shields, Denis C.

Source: PLoS ONE; 10/31/2024, Vol. 19 Issue 10, p1-18, 18p

Subject Terms: PEPTIDES, GERMINATION, GLUTAMIC acid, EMBRYOLOGY, CULTIVARS, CHICKPEA

A Quantitative Genetic Interaction Map of HIV Infection

Authors: Gordon, David E., Watson, Ariane, Roguev, Assen, Zheng, Simin, Jang, Gwendolyn M., Kane, Joshua, Xu, Jiewei, Guo, Jeffrey Z., Stevenson, Erica, Swaney, Danielle L., Franks-Skiba, Kathy, Verschueren, Erik, Shales, Michael, Crosby, David C., Frankel, Alan D., Marson, Alexander, Marazzi, Ivan, Cagney, Gerard, Krogan, Nevan J.

Source: In Molecular Cell 16 April 2020 78(2):197-209

SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18

Authors: Alsulami, Manal ^{‡, §}, Munawar, Nayla ^{‡, ¶}, Dillon, Eugene ^§, Oliviero, Giorgio ^{‡, §}, Wynne, Kieran ^{‡, ‖}, Alsolami, Mona ^{‡, §}, Moss, Catherine ^§, Ó Gaora, Peadar ^{‡, §}, O'Meara, Fergal ^{‡, §}, Cotter, David ^**, Cagney, Gerard ^{‡, §, ‡‡}

Source: In Molecular & Cellular Proteomics July 2019 18(7):1428-1436

ApoE elevation is associated with the persistence of psychotic experiences from age 12 to age 18: Evidence from the ALSPAC birth cohort

Authors: Sabherwal, Sophie, Föcking, Melanie, English, Jane A., Fitzsimons, Stephen, Hryniewiecka, Magdalena, Wynne, Kieran, Scaife, Caitriona, Healy, Colm, Cannon, Mary, Belton, Orina, Zammit, Stanley, Cagney, Gerard, Cotter, David R.

Source: In Schizophrenia Research July 2019 209:141-147

Integrated Lipidomics and Proteomics Point to Early Blood-Based Changes in Childhood Preceding Later Development of Psychotic Experiences: Evidence From the Avon Longitudinal Study of Parents and Children

Authors: Madrid-Gambin, Francisco, Föcking, Melanie, Sabherwal, Sophie, Heurich, Meike, English, Jane A., O’Gorman, Aoife, Suvitaival, Tommi, Ahonen, Linda, Cannon, Mary, Lewis, Glyn, Mattila, Ismo, Scaife, Caitriona, Madden, Sean, Hyötyläinen, Tuulia, Orešič, Matej, Zammit, Stanley, Cagney, Gerard, Cotter, David R., Brennan, Lorraine

Source: In Biological Psychiatry 1 July 2019 86(1):25-34

Expression Proteomics and Histone Analysis Reveal Extensive Chromatin Network Changes and a Role for Histone Tail Trimming during Cellular Differentiation.

Authors: Oliviero, Giorgio, Wynne, Kieran, Andrews, Darrell, Crean, John, Kolch, Walter, Cagney, Gerard

Source: Biomolecules (2218-273X); Jul2024, Vol. 14 Issue 7, p747, 22p

Subject Terms: PROTEIN expression, GENETIC regulation, CATHEPSIN B, CATHEPSIN D, CHROMATIN, CHROMATIN-remodeling complexes

The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders

Authors: Willsey, A. Jeremy, Morris, Montana T., Wang, Sheng, Willsey, Helen R., Sun, Nawei, Teerikorpi, Nia, Baum, Tierney B., Cagney, Gerard, Bender, Kevin J., Desai, Tejal A., Srivastava, Deepak, Davis, Graeme W., Doudna, Jennifer, Chang, Edward, Sohal, Vikaas, Lowenstein, Daniel H., Li, Hao, Agard, David, Keiser, Michael J., Shoichet, Brian, von Zastrow, Mark, Mucke, Lennart, Finkbeiner, Steven, Gan, Li, Sestan, Nenad, Ward, Michael E., Huttenhain, Ruth, Nowakowski, Tomasz J., Bellen, Hugo J., Frank, Loren M., Khokha, Mustafa K., Lifton, Richard P., Kampmann, Martin, Ideker, Trey, State, Matthew W., Krogan, Nevan J.

Source: In Cell 26 July 2018 174(3):505-520

A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities

Authors: Conway, Eric, Jerman, Emilia, Healy, Evan, Ito, Shinsuke, Holoch, Daniel, Oliviero, Giorgio, Deevy, Orla, Glancy, Eleanor, Fitzpatrick, Darren J., Mucha, Marlena, Watson, Ariane, Rice, Alan M., Chammas, Paul, Huang, Christine, Pratt-Kelly, Indigo, Koseki, Yoko, Nakayama, Manabu, Ishikura, Tomoyuki, Streubel, Gundula, Wynne, Kieran, Hokamp, Karsten, McLysaght, Aoife, Ciferri, Claudio, Di Croce, Luciano, Cagney, Gerard, Margueron, Raphaël, Koseki, Haruhiko, Bracken, Adrian P.

Source: In Molecular Cell 3 May 2018 70(3):408-421

Unravelling the transcriptional responses of TGF‐β: Smad3 and EZH2 constitute a regulatory switch that controls neuroretinal epithelial cell fate specification

Authors: Andrews, Darrell, Oliviero, Giorgio, De Chiara, Letizia, Watson, Ariane, Rochford, Emily, Wynne, Kieran, Kennedy, Ciaran, Clerkin, Shane, Doyle, Benjamin, Godson, Catherine, Connell, Paul, O'Brien, Colm, Cagney, Gerard, Crean, John

Source: FASEB journal. 33(5):6667-6681

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100103323655.0x000001&indx=1&recIds=ETOCvdc_100103323655.0x000001

Epigenetic Factors in Schizophrenia: Mechanisms and Experimental Approaches

Authors: Föcking, Melanie, Doyle, Benjamin, Munawar, Nayla, Dillon, Eugene T., Cotter, David, Cagney, Gerard

Source: Molecular neuropsychiatry. 5(1):6-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100084711686.0x000001&indx=1&recIds=ETOCvdc_100084711686.0x000001

Integrated single cell RNA‐seq and ATAC‐seq of iPSC‐derived kidney organoids reveals the complexity of TGFβ signalling to chromatin during the origin of fibroblasts

Authors: Davis, Jessica L., Kennedy, Ciaran, Clerkin, Shane, Treacy, Niall, Andrews, Darrell, Dodd, Thomas, Murphy, Alison, Moss, Catherine, Brazil, Derek, Brougham, Dermot, Cagney, Gerard, Finlay, Darren, Crean, John

Source: FASEB journal. 36

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100196463145.0x000001&indx=1&recIds=ETOCvdc_100196463145.0x000001

A Quininib Analogue and Cysteinyl Leukotriene Receptor Antagonist Inhibits Vascular Endothelial Growth Factor (VEGF)-independent Angiogenesis and Exerts an Additive Antiangiogenic Response with Bevacizumab

Authors: Butler, Clare T., Reynolds, Alison L., Tosetto, Miriam, Dillon, Eugene T., Guiry, Patrick J., Cagney, Gerard, O'Sullivan, Jacintha, Kennedy, Breandán N.

Source: In Journal of Biological Chemistry 3 March 2017 292(9):3552-3567

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Casein Hydrolysate with Glycemic Control Properties: Evidence from Cells, Animal Models, and Humans

Authors: Drummond, Elaine, Flynn, Sarah, Whelan, Helena, Nongonierma, Alice B., Holton, Thérèse A., Robinson, Aisling, Egan, Thelma, Cagney, Gerard, Shields, Denis C., Gibney, Eileen R.

Source: Journal of agricultural and food chemistry. 66(17):4352-4363

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN615809030&indx=1&recIds=ETOCRN615809030

Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells

Authors: Oliviero, Giorgio ^‡, Brien, Gerard L. ^{§, ¶}, Waston, Ariane ^‡, Streubel, Gundula ^¶, Jerman, Emilia ^¶, Andrews, Darrell ^‡, Doyle, Benjamin ^‡, Munawar, Nayla ^‡, Wynne, Kieran ^‡, Crean, John ^‡, Bracken, Adrian P. ^{¶, ‖}, Cagney, Gerard ^{‡, ‖, **}

Source: In Molecular & Cellular Proteomics November 2016 15(11):3450-3460

Optimal computational comparison of mass spectrometric peptide profiles of alternative hydrolysates from the same starting material

Authors: Holton, Thérèse A., Dillon, Eugène T., Robinson, Aisling, Wynne, Kieran, Cagney, Gerard, Shields, Denis C.

Source: In LWT November 2016 73:296-302

Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells

Authors: Topol, Aaron, Zhu, Shijia, Hartley, Brigham J., English, Jane, Hauberg, Mads E., Tran, Ngoc, Rittenhouse, Chelsea Ann, Simone, Anthony, Ruderfer, Douglas M., Johnson, Jessica, Readhead, Ben, Hadas, Yoav, Gochman, Peter A., Wang, Ying-Chih, Shah, Hardik, Cagney, Gerard, Rapoport, Judith, Gage, Fred H., Dudley, Joel T., Sklar, Pamela, Mattheisen, Manuel, Cotter, David, Fang, Gang, Brennand, Kristen J.

Source: In Cell Reports 3 May 2016 15(5):1024-1036