Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae

Authors: Heiner Kuhl, Peter T. Euclide, Christophe Klopp, Cédric Cabau, Margot Zahm, Céline Lopez-Roques, Carole Iampietro, Claire Kuchly, Cécile Donnadieu, Romain Feron, Hugues Parrinello, Charles Poncet, Lydia Jaffrelo, Carole Confolent, Ming Wen, Amaury Herpin, Elodie Jouanno, Anastasia Bestin, Pierrick Haffray, Romain Morvezen, Taina Rocha de Almeida, Thomas Lecocq, Bérénice Schaerlinger, Dominique Chardard, Daniel Żarski, Wesley A. Larson, John H. Postlethwait, Serik Timirkhanov, Werner Kloas, Sven Wuertz, Matthias Stöck, Yann Guiguen

Source: BMC Biology, Vol 22, Iss 1, Pp 1-17 (2024)

Subject Terms: Sex-determination, Genome, Perches, Pikeperches, Sex chromosomes, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/e5a2e4ad64204ffea2d5738002e1dc17

Changes in DNA methylation contribute to rapid adaptation in bacterial plant pathogen evolution.

Authors: Rekha Gopalan-Nair, Aurore Coissac, Ludovic Legrand, Céline Lopez-Roques, Yann Pécrix, Céline Vandecasteele, Olivier Bouchez, Xavier Barlet, Anne Lanois, Alain Givaudan, Julien Brillard, Stéphane Genin, Alice Guidot

Source: PLoS Biology, Vol 22, Iss 9, p e3002792 (2024)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/a5989cf9430e44ea90e22d3ddf1d5953

Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France

Authors: Enora Dupas, Karine Durand, Adrien Rieux, Martial Briand, Olivier Pruvost, Amandine Cunty, Nicolas Denancé, Cécile Donnadieu, Bruno Legendre, Céline Lopez-Roques, Sophie Cesbron, Virginie Ravigné, Marie-Agnès Jacques

Source: Communications Biology, Vol 6, Iss 1, Pp 1-13 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/ba632599595f400ab3ac1e22baebfd6e

A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

Authors: Mateus C. Adolfi, Kang Du, Susanne Kneitz, Cédric Cabau, Margot Zahm, Christophe Klopp, Romain Feron, Rômulo V. Paixão, Eduardo S. Varela, Fernanda L. de Almeida, Marcos A. de Oliveira, Rafael H. Nóbrega, Céline Lopez-Roques, Carole Iampietro, Jérôme Lluch, Werner Kloas, Sven Wuertz, Fabian Schaefer, Matthias Stöck, Yann Guiguen, Manfred Schartl

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-14 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/0c88a4cfe9c94edd9b653e2750f87c8d

Population genomics of apricots unravels domestication history and adaptive events

Authors: Alexis Groppi, Shuo Liu, Amandine Cornille, Stéphane Decroocq, Quynh Trang Bui, David Tricon, Corinne Cruaud, Sandrine Arribat, Caroline Belser, William Marande, Jérôme Salse, Cécile Huneau, Nathalie Rodde, Wassim Rhalloussi, Stéphane Cauet, Benjamin Istace, Erwan Denis, Sébastien Carrère, Jean-Marc Audergon, Guillaume Roch, Patrick Lambert, Tetyana Zhebentyayeva, Wei-Sheng Liu, Olivier Bouchez, Céline Lopez-Roques, Rémy-Félix Serre, Robert Debuchy, Joseph Tran, Patrick Wincker, Xilong Chen, Pierre Pétriacq, Aurélien Barre, Macha Nikolski, Jean-Marc Aury, Albert Glenn Abbott, Tatiana Giraud, Véronique Decroocq

Source: Nature Communications, Vol 12, Iss 1, Pp 1-16 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/0104f159129445f597c4927ff812917d

A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly

Authors: Quentin Piet, Gaetan Droc, William Marande, Gautier Sarah, Stéphanie Bocs, Christophe Klopp, Mickael Bourge, Sonja Siljak-Yakovlev, Olivier Bouchez, Céline Lopez-Roques, Sandra Lepers-Andrzejewski, Laurent Bourgois, Joseph Zucca, Michel Dron, Pascale Besse, Michel Grisoni, Cyril Jourda, Carine Charron

Source: Plant Communications, Vol 3, Iss 5, Pp 100330- (2022)

Subject Terms: vanilla, whole-genome sequencing, optical mapping, partial endoreplication, genome hub, Botany, QK1-989

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590346222000803; https://doaj.org/toc/2590-3462

Access URL: https://doaj.org/article/0995c75b1eed4e4e8685152fa2f23fe8

Genome structure and content of the rice root‐knot nematode (Meloidogyne graminicola)

Authors: Ngan Thi Phan, Julie Orjuela, Etienne G. J. Danchin, Christophe Klopp, Laetitia Perfus‐Barbeoch, Djampa K. Kozlowski, Georgios D. Koutsovoulos, Céline Lopez‐Roques, Olivier Bouchez, Margot Zahm, Guillaume Besnard, Stéphane Bellafiore

Source: Ecology and Evolution, Vol 10, Iss 20, Pp 11006-11021 (2020)

Subject Terms: cereals, horizontal gene transfer, pest, reference genome, root‐knot nematode, transposable element, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7758

Access URL: https://doaj.org/article/a714aa61f0a74ca0a72d2557ccd900ec

Long-Read Genome Sequence of the Sugar Beet Rhizosphere Mycoparasite Pythium oligandrum

Authors: Charlène Faure, Marine Veyssière, Betty Boëlle, Hélène San Clemente, Olivier Bouchez, Céline Lopez-Roques, Adeline Chaubet, Yves Martinez, Karel Bezouška, Martin Suchánek, Elodie Gaulin, Thomas Rey, Bernard Dumas

Source: G3: Genes, Genomes, Genetics, Vol 10, Iss 2, Pp 431-436 (2020)

Subject Terms: pythium oligandrum, genome, pacbio, rnaseq, mycoparasitism, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2160-1836

Access URL: https://doaj.org/article/dd33ff3608944e00bc859beede21ba4f

Parallels between experimental and natural evolution of legume symbionts

Authors: Camille Clerissi, Marie Touchon, Delphine Capela, Mingxing Tang, Stéphane Cruveiller, Clémence Genthon, Céline Lopez-Roques, Matthew A. Parker, Lionel Moulin, Catherine Masson-Boivin, Eduardo P. C. Rocha

Source: Nature Communications, Vol 9, Iss 1, Pp 1-13 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/58c7293970ac4b7dbf603cf85ebaf788

Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco

Authors: Saïd Oulghazi, Mohieddine Moumni, Slimane Khayi, Kévin Robic, Sohaib Sarfraz, Céline Lopez-Roques, Céline Vandecasteele, Denis Faure

Source: Microorganisms, Vol 8, Iss 6, p 895 (2020)

Subject Terms: Pectobacterium, Dickeya, plant pathogen, potato tuber, genome, field sampling, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/8/6/895; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/c79bad1e54cf452d9533a5f25cb4cf5f

Author Correction: Parallels between experimental and natural evolution of legume symbionts

Authors: Camille Clerissi, Marie Touchon, Delphine Capela, Mingxing Tang, Stéphane Cruveiller, Clémence Genthon, Céline Lopez-Roques, Matthew A. Parker, Lionel Moulin, Catherine Masson-Boivin, Eduardo P. C. Rocha

Source: Nature Communications, Vol 9, Iss 1, Pp 1-1 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7bda66ecebce428d8e687f5877b87037

A Chromosome-Scale Genome Assembly Resource for Myriosclerotinia sulcatula Infecting Sedge Grass (Carex sp.)

Authors: Stefan Kusch, Heba M. M. Ibrahim, Catherine Zanchetta, Celine Lopez-Roques, Cecile Donnadieu, Sylvain Raffaele

Source: Molecular Plant-Microbe Interactions, Vol 33, Iss 7, Pp 880-883 (2020)

Subject Terms: fungal pathogen, grass plants, genome, host specific, long read sequencing, Myriosclerotinia sulcatula, Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/7e0676c859e5480d91e4de4a9190cb12

Structure of the intergenic spacers in chicken ribosomal DNA

Authors: Alexander Dyomin, Svetlana Galkina, Valerie Fillon, Stephane Cauet, Celine Lopez-Roques, Nathalie Rodde, Christophe Klopp, Alain Vignal, Anastasia Sokolovskaya, Alsu Saifitdinova, Elena Gaginskaya

Source: Genetics Selection Evolution, Vol 51, Iss 1, Pp 1-13 (2019)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12711-019-0501-7; https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/499e54983b804b96b7d4afbdfdadcf62

The Complete Genome Sequence of the Fish Pathogen Tenacibaculum maritimum Provides Insights into Virulence Mechanisms

Authors: David Pérez-Pascual, Aurelie Lunazzi, Ghislaine Magdelenat, Zoe Rouy, Alain Roulet, Celine Lopez-Roques, Robert Larocque, Tristan Barbeyron, Angélique Gobet, Gurvan Michel, Jean-François Bernardet, Eric Duchaud

Source: Frontiers in Microbiology, Vol 8 (2017)

Subject Terms: Tenacibaculum maritimum, fish pathogen, virulence factors, genome, toxins, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fmicb.2017.01542/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/dd5479c30b684772a5ce61bcc2c91287