EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes

Authors: Richter, Daniel J., Berney, Cédric, Strassert, Jürgen F. H., Poh, Yu-Ping, Herman, Emily K., Muñoz-Gómez, Sergio A., Wideman, Jeremy G., Burki, Fabien, de Vargas, Colomban

Source: Peer Community Journal, Vol 2, Iss , Pp - (2022)

Subject Terms: Archaeology, CC1-960, Science

File Description: electronic resource

Relation: https://peercommunityjournal.org/articles/10.24072/pcjournal.173/; https://doaj.org/toc/2804-3871

Access URL: https://doaj.org/article/0aaaccdebcfb402f82b983a426590c9f

Unravelling the Phylogeny of a Common Intestinal Protist: Intrageneric Diversity of Endolimax

Authors: Hocke, Emma Filtenborg, Jamy, Mahwash, Burki, Fabien, Clark, C. Graham, Stensvold, Christen Rune

Source: In Protist October 2022 173(5)

Diversity and ecology of protists revealed by metabarcoding

Authors: Burki, Fabien, Sandin, Miguel M., Jamy, Mahwash

Source: In Current Biology 11 October 2021 31(19):R1267-R1280

Phylogenomic Insights into the Origin of Primary Plastids

Authors: Irisarri, Iker, Strassert, Jürgen F H, Burki, Fabien

Source: Systematic biology. 71(1):105-120

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100142917927.0x000001&indx=1&recIds=ETOCvdc_100142917927.0x000001

Automated Removal of Non-homologous Sequence Stretches with PREQUAL

Authors: Irisarri, Iker, Burki, Fabien, Whelan, Simon

Source: Methods in molecular biology. 2231:147-162

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN625406480&indx=1&recIds=ETOCRN625406480

Benchmarking long‐read sequencing strategies for obtaining ASV‐resolved rRNA operons from environmental microeukaryotes.

Authors: Overgaard, Christina Karmisholt, Jamy, Mahwash, Radutoiu, Simona, Burki, Fabien, Dueholm, Morten Kam Dahl

Source: Molecular Ecology Resources; Oct2024, Vol. 24 Issue 7, p1-16, 16p

Subject Terms: AGRICULTURE, OPERONS, SOIL sampling, RIBOSOMAL RNA, BEST practices

Predatory colponemids are the sister group to all other alveolates

Authors: Tikhonenkov, Denis V., Strassert, Jürgen F.H., Janouškovec, Jan, Mylnikov, Alexander P., Aleoshin, Vladimir V., Burki, Fabien, Keeling, Patrick J.

Source: In Molecular Phylogenetics and Evolution August 2020 149

Evolution: Untangling the mix of plastid endosymbiosis events.

Authors: Keeling, Patrick J.¹ (AUTHOR) pkeeling@mail.ubc.ca, Burki, Fabien² (AUTHOR) fabien.burki@ebc.uu.se

Source: Current Biology. Feb2025, Vol. 35 Issue 3, pR94-R96. 3p.

Subject Terms: *ORGANELLE formation, *ENDOSYMBIOSIS, *PROTEINS

The New Tree of Eukaryotes

Authors: Burki, Fabien, Roger, Andrew J., Brown, Matthew W., Simpson, Alastair G.B.

Source: In Trends in Ecology & Evolution January 2020 35(1):43-55

Progress towards the Tree of Eukaryotes

Authors: Keeling, Patrick J., Burki, Fabien

Source: In Current Biology 19 August 2019 29(16):R808-R817

Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity

Authors: Jamy, Mahwash, Foster, Rachel, Barbera, Pierre, Czech, Lucas, Kozlov, Alexey, Stamatakis, Alexandros, Bending, Gary, Hilton, Sally, Bass, David, Burki, Fabien

Source: Molecular ecology resources. 20(2):429-443

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100103234571.0x000001&indx=1&recIds=ETOCvdc_100103234571.0x000001

Perspectives from Ten Years of Protist Studies by High‐Throughput Metabarcoding

Authors: Santoferrara, Luciana, Burki, Fabien, Filker, Sabine, Logares, Ramiro, Dunthorn, Micah, McManus, George B.

Source: Journal of eukaryotic microbiology. 67(5):612-622

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100106918951.0x000001&indx=1&recIds=ETOCvdc_100106918951.0x000001

Phylogenomics supports the monophyly of the Cercozoa

Authors: Irwin, Nicholas A.T., Tikhonenkov, Denis V., Hehenberger, Elisabeth, Mylnikov, Alexander P., Burki, Fabien, Keeling, Patrick J.

Source: In Molecular Phylogenetics and Evolution January 2019 130:416-423

Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa.

Authors: Burki, Fabien, Nikolaev, Sergey I., Bolivar, Ignacio

Source: Genome; August 2006, Vol. 49 Issue 8, p882-887, 6p

Comparative genomics of Ascetosporea gives new insight into the evolutionary basis for animal parasitism in Rhizaria.

Authors: Hiltunen Thorén, Markus, Onuț-Brännström, Ioana, Alfjorden, Anders, Pecková, Hana, Swords, Fiona, Hooper, Chantelle, Holzer, Astrid S., Bass, David, Burki, Fabien

Source: BMC Biology; 5/3/2024, Vol. 22 Issue 1, p1-17, 17p

Subject Terms: PARASITISM, GENE families, BROOD parasitism, AQUATIC invertebrates, PHYLOGENY, COMPARATIVE genomics, GENES, GENOMES

Identification of a new gregarine parasite associated with mass mortality events of freshwater pearl mussels (Margaritifera margaritifera) in Sweden.

Authors: Alfjorden, Anders, Onut‐Brännström, Ioana, Wengström, Niklas, Kristmundsson, Arni, Jamy, Mahwash, Persson, B. David, Burki, Fabien

Source: Journal of Eukaryotic Microbiology; May2024, Vol. 71 Issue 3, p1-18, 18p

Subject Terms: FRESHWATER mussels, LIFE cycles (Biology), MORTALITY, PARASITIC diseases, ENDANGERED species, ARACHNOID cysts

Geographic Terms: SWEDEN

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics

Authors: Janouškovec, Jan, Gavelis, Gregory S., Burki, Fabien, Dinh, Donna, Bachvaroff, Tsvetan R., Gornik, Sebastian G., Bright, Kelley J., Imanian, Behzad, Strom, Suzanne L., Delwiche, Charles F., Waller, Ross F., Fensome, Robert A., Leander, Brian S., Rohwer, Forest L., Saldarriaga, Juan F.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 Jan 01. 114(2), E171-E180.

Access URL: https://www.jstor.org/stable/26478736

Mitochondrial Evolution: Going, Going, Gone

Authors: Burki, Fabien

Source: In Current Biology 23 May 2016 26(10):R410-R412

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

Authors: Burki, Fabien, Kaplan, Maia, Tikhonenkov, Denis V., Zlatogursky, Vasily, Minh, Bui Quang, Radaykina, Liudmila V., Smirnov, Alexey, Mylnikov, Alexander P., Keeling, Patrick J.

Source: Proceedings: Biological Sciences, 2016 Jan . 283(1823), 1-10.

Access URL: http://www.jstor.org/stable/24762464

The long‐time orphan protist Meringosphaeramediterranea Lohmann, 1902 [1903] is a centrohelid heliozoan

Authors: Zlatogursky, Vasily V., Shɨshkin, Yegor, Drachko, Daria, Burki, Fabien

Source: Journal of eukaryotic microbiology. 68(5)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100132562893.0x000001&indx=1&recIds=ETOCvdc_100132562893.0x000001