Lymphoid origin of intrinsically activated plasmacytoid dendritic cells in mice

Authors: Alessandra Machado Araujo, Joseph D Dekker, Kendra Garrison, Zhe Su, Catherine Rhee, Zicheng Hu, Bum-Kyu Lee, Daniel Osorio, Jiwon Lee, Vishwanath R Iyer, Lauren IR Ehrlich, George Georgiou, Gregory Ippolito, Stephen Yi, Haley O Tucker

Source: eLife, Vol 13 (2024)

Subject Terms: plasmacytoid DCs, B cells, CLPs, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/96394; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/80e19280b37e44668886ed8fca1eecca

Dynamic and distinct histone modifications facilitate human trophoblast lineage differentiation

Authors: Bum-Kyu Lee, Joudi Salamah, Elisha Cheeran, Enoch Appiah Adu-Gyamfi

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)

Subject Terms: Broad H3K4me3 domains, Histone modifications, Placental development, Trophoblast lineage differentiation, Trophoblast stem cells, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/6cbfad91b9094cff96dc130446096052

The transcriptional regulatory network modulating human trophoblast stem cells to extravillous trophoblast differentiation

Authors: Mijeong Kim, Yu Jin Jang, Muyoung Lee, Qingqing Guo, Albert J. Son, Nikita A. Kakkad, Abigail B. Roland, Bum-Kyu Lee, Jonghwan Kim

Source: Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/5894419c30db4a978c419bef5f76b63e

A MYC-ZNF148-ID1/3 regulatory axis modulating cancer stem cell traits in aggressive breast cancer

Authors: Mijeong Kim, Manjot Singh, Bum-Kyu Lee, Moira Hibbs, Kirsty Richardson, Lesley Ellies, Larissa Wintle, Lisa M. Stuart, Jenny Y. Wang, Dominic C. Voon, Pilar Blancafort, Jianlong Wang, Jonghwan Kim, Peter J. Leedman, Andrew J. Woo

Source: Oncogenesis, Vol 11, Iss 1, Pp 1-13 (2022)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2157-9024

Access URL: https://doaj.org/article/3a2eb9d8862b4252af620303b3ec1a97

Meiosis-specific cohesin complexes display essential and distinct roles in mitotic embryonic stem cell chromosomes

Authors: Eui-Hwan Choi, Seobin Yoon, Young Eun Koh, Tae Kyung Hong, Jeong Tae Do, Bum-Kyu Lee, Yoonsoo Hahn, Keun P. Kim

Source: Genome Biology, Vol 23, Iss 1, Pp 1-31 (2022)

Subject Terms: Meiosis, Mitosis, Embryonic stem cell, Cohesin, Chromosome, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/d76b5b5d8acd4d09ae6d47331e59ec91

The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer

Authors: Emily Golden, Rabab Rashwan, Eleanor A. Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozlowski, Elizabeth K. M. Johnstone, Heng B. See, Ciara Duffy, Jeremy Parry, Kim A. Lagerborg, Piotr Czapiewski, Javier A. Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D. G. Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J. Pavlos, Wojciech Biernat, Mohit Jain, Andrew J. Woo, Andrew Redfern, Pilar Blancafort

Source: Nature Communications, Vol 12, Iss 1, Pp 1-22 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7a78efc95f94434186efe33c5a90c19a

Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells

Authors: Bum-Kyu Lee, Yu jin Jang, Mijeong Kim, Lucy LeBlanc, Catherine Rhee, Jiwoon Lee, Samuel Beck, Wenwen Shen, Jonghwan Kim

Source: Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7542d27cd2304f37a4ead0cec651eb99

Integrating High-Throughput Approaches and in vitro Human Trophoblast Models to Decipher Mechanisms Underlying Early Human Placenta Development

Authors: Bum-Kyu Lee, Jonghwan Kim

Source: Frontiers in Cell and Developmental Biology, Vol 9 (2021)

Subject Terms: placenta, trophoblast, trophoblast stem cells, human placenta models, transcriptomes, epigenomes, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2021.673065/full; https://doaj.org/toc/2296-634X

Access URL: https://doaj.org/article/9a85dc2c689244a1b7c07d0d749aa2b4

miRNA-mediated TUSC3 deficiency enhances UPR and ERAD to promote metastatic potential of NSCLC

Authors: Young-Jun Jeon, Taewan Kim, Dongju Park, Gerard J. Nuovo, Siyeon Rhee, Pooja Joshi, Bum-Kyu Lee, Johan Jeong, Sung-suk Suh, Jeff E. Grotzke, Sung-Hak Kim, Jieun Song, Hosung Sim, Yonghwan Kim, Yong Peng, Youngtae Jeong, Michela Garofalo, Nicola Zanesi, Jonghwan Kim, Guang Liang, Ichiro Nakano, Peter Cresswell, Patrick Nana-Sinkam, Ri Cui, Carlo M. Croce

Source: Nature Communications, Vol 9, Iss 1, Pp 1-13 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/20aea16a00a84e518d6ba422033dbee0

Fosl1 overexpression directly activates trophoblast-specific gene expression programs in embryonic stem cells

Authors: Bum-Kyu Lee, Nadima Uprety, Yu Jin Jang, Scott K. Tucker, Catherine Rhee, Lucy LeBlanc, Samuel Beck, Jonghwan Kim

Source: Stem Cell Research, Vol 26, Iss , Pp 95-102 (2018)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1873506117302635; https://doaj.org/toc/1873-5061

Access URL: https://doaj.org/article/d555a5b1610143f486b7b2e088f4fe91

Pathogen Infection and MORC Proteins Affect Chromatin Accessibility of Transposable Elements and Expression of Their Proximal Genes in Arabidopsis

Authors: Yogendra Bordiya, Yi Zheng, Ji-Chul Nam, April C. Bonnard, Hyong Woo Choi, Bum-Kyu Lee, Jonghwan Kim, Daniel F. Klessig, Zhangjun Fei, Hong-Gu Kang

Source: Molecular Plant-Microbe Interactions, Vol 29, Iss 9, Pp 674-687 (2016)

Subject Terms: Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/b509ba3d932242e9a8c18549621564bc

Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation

Authors: Lucy LeBlanc, Bum-Kyu Lee, Andy C Yu, Mijeong Kim, Aparna V Kambhampati, Shannon M Dupont, Davide Seruggia, Byoung U Ryu, Stuart H Orkin, Jonghwan Kim

Source: eLife, Vol 7 (2018)

Subject Terms: Yap1, apoptosis, embryonic stem cells, differentiation, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/40167; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/c27f6bfa6c6c4174b6c51e74df547c46

Tgif1 Counterbalances the Activity of Core Pluripotency Factors in Mouse Embryonic Stem Cells

Authors: Bum-Kyu Lee, Wenwen Shen, Jiwoon Lee, Catherine Rhee, Haewon Chung, Kun-Yong Kim, In-Hyun Park, Jonghwan Kim

Source: Cell Reports, Vol 13, Iss 1, Pp 52-60 (2015)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221112471500964X; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/8d84cab2c8a747a9bffb9d985ee63e0b

Bright/Arid3A Acts as a Barrier to Somatic Cell Reprogramming through Direct Regulation of Oct4, Sox2, and Nanog

Authors: Melissa Popowski, Troy D. Templeton, Bum-Kyu Lee, Catherine Rhee, He Li, Cathrine Miner, Joseph D. Dekker, Shari Orlanski, Yehudit Bergman, Vishwanath R. Iyer, Carol F. Webb, Haley Tucker

Source: Stem Cell Reports, Vol 2, Iss 1, Pp 26-35 (2014)

Subject Terms: Medicine (General), R5-920, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213671113001525; https://doaj.org/toc/2213-6711

Access URL: https://doaj.org/article/4a81e6e80a0c47439d7ef2ef89fe7aa7

Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

Authors: Zhihao Ding, Yunyun Ni, Sander W Timmer, Bum-Kyu Lee, Anna Battenhouse, Sandra Louzada, Fengtang Yang, Ian Dunham, Gregory E Crawford, Jason D Lieb, Richard Durbin, Vishwanath R Iyer, Ewan Birney

Source: PLoS Genetics, Vol 11, Iss 4, p e1005177 (2015)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4412500?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/83e971f382564f24903663e69bd1e39f

Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

Authors: Zhihao Ding, Yunyun Ni, Sander W Timmer, Bum-Kyu Lee, Anna Battenhouse, Sandra Louzada, Fengtang Yang, Ian Dunham, Gregory E Crawford, Jason D Lieb, Richard Durbin, Vishwanath R Iyer, Ewan Birney

Source: PLoS Genetics, Vol 10, Iss 11, p e1004798 (2014)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4238955?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/d650d1d5787144e6b909d9a7af586c3a

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma.

Authors: Matthew Wortham, Changcun Guo, Monica Zhang, Lingyun Song, Bum-Kyu Lee, Vishwanath R Iyer, Terrence S Furey, Gregory E Crawford, Hai Yan, Yiping He

Source: PLoS ONE, Vol 9, Iss 9, p e107156 (2014)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4157845?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/8e33019866814d178ccbf7fda350fa58

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Authors: Yoichiro Shibata, Nathan C Sheffield, Olivier Fedrigo, Courtney C Babbitt, Matthew Wortham, Alok K Tewari, Darin London, Lingyun Song, Bum-Kyu Lee, Vishwanath R Iyer, Stephen C J Parker, Elliott H Margulies, Gregory A Wray, Terrence S Furey, Gregory E Crawford

Source: PLoS Genetics, Vol 8, Iss 6, p e1002789 (2012)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3386175?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/9e59bc8a7ca044b99408318226a660e2

Lymphoid origin of intrinsically activated plasmacytoid dendritic cells in mice.

Authors: Machado Araujo, Alessandra, Dekker, Joseph D., Garrison, Kendra, Zhe Su, Rhee, Catherine, Zicheng Hu, Bum-Kyu Lee, Osorio, Daniel, Lee, Jiwon, Iyer, Vishwanath R., Ehrlich, Lauren I. R., Georgiou, George, Ippolito, Gregory, Yi, Stephen, Tucker, Haley O.

Source: eLife; 9/13/2024, p1-19, 19p

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