Genome-wide association identifies a missing hydrolase for tocopherol synthesis in plants

Authors: Albert, Elise, Kim, Sungsoo, Magallanes-Lundback, Maria, Bao, Yan, Deason, Nicholas, Danilo, Benoit, Wu, Di, Li, Xiaowei, Wood, Joshua C., Bornowski, Nolan, Gore, Michael A., Buell, C. Robin, DellaPenna, Dean

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Jun 01. 119(23), 1-10.

Access URL: https://www.jstor.org/stable/27152092

The biosynthesis of thymol, carvacrol, and thymohydroquinone in Lamiaceae proceeds via cytochrome P450s and a short-chain dehydrogenase

Authors: Krause, Sandra T., Liao, Pan, Crocoll, Christoph, Boachon, Benoit, Förster, Christiane, Leidecker, Franziska, Wiese, Natalie, Zhao, Dongyan, Wood, Joshua C., Buell, C. Robin, Gershenzon, Jonathan, Dudareva, Natalia, Degenhardt, Jörg

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Dec . 118(52), 1-10.

Access URL: https://www.jstor.org/stable/27112791

The rice genome annotation project: an updated database for mining the rice genome.

Authors: Hamilton, John P, Li, Chenxin, Buell, C Robin

Source: Nucleic Acids Research; 1/6/2025, Vol. 53 Issue D1, pD1614-D1622, 9p

Cell‐type‐aware regulatory landscapes governing monoterpene indole alkaloid biosynthesis in the medicinal plant Catharanthus roseus.

Authors: Li, Chenxin, Colinas, Maite, Wood, Joshua C., Vaillancourt, Brieanne, Hamilton, John P., Jones, Sophia L., Caputi, Lorenzo, O'Connor, Sarah E., Buell, C. Robin

Source: New Phytologist; Jan2025, Vol. 245 Issue 1, p347-362, 16p

Subject Terms: TRANSCRIPTION factors, INDOLE alkaloids, GENE expression, CATHARANTHUS roseus, BIOSYNTHESIS

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity

Authors: Hoopes, Genevieve, Meng, Xiaoxi, Hamilton, John P., Achakkagari, Sai Reddy, de Alves Freitas Guesdes, Fernanda, Bolger, Marie E., Coombs, Joseph J., Esselink, Danny, Kaiser, Natalie R., Kodde, Linda, Kyriakidou, Maria, Lavrijssen, Brian, van Lieshout, Natascha, Shereda, Rachel, Tuttle, Heather K., Vaillancourt, Brieanne, Wood, Joshua C., de Boer, Jan M., Bornowski, Nolan, Bourke, Peter, Douches, David, van Eck, Herman J., Ellis, Dave, Feldman, Max J., Gardner, Kyle M., Hopman, Johannes C.P., Jiang, Jiming, De Jong, Walter S., Kuhl, Joseph C., Novy, Richard G., Oome, Stan, Sathuvalli, Vidyasagar, Tan, Ek Han, Ursum, Remco A., Vales, M. Isabel, Vining, Kelly, Visser, Richard G.F., Vossen, Jack, Yencho, G. Craig, Anglin, Noelle L., Bachem, Christian W.B., Endelman, Jeffrey B., Shannon, Laura M., Strömvik, Martina V., Tai, Helen H., Usadel, Björn, Buell, C. Robin, Finkers, Richard

Source: In Molecular Plant 7 March 2022 15(3):520-536

Single‐parent expression drives dynamic gene expression complementation in maize hybrids

Authors: Li, Zhi, Zhou, Peng, Della Coletta, Rafael, Zhang, Tifu, Brohammer, Alex B., O'Connor, Christine, Vaillancourt, Brieanne, Lipzen, Anna, Daum, Chris, Barry, Kerrie, de Leon, Natalia, Hirsch, Cory D., Buell, C. Robin, Kaeppler, Shawn M., Springer, Nathan M., Hirsch, Candice N.

Source: Plant journal. 105(1):93-107

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100114685304.0x000001&indx=1&recIds=ETOCvdc_100114685304.0x000001

Self‐fertility and resistance to the Colorado potato beetle (Leptinotarsa decemlineata) in a diploid Solanum chacoense recombinant inbred line population

Authors: Kaiser, Natalie R., Billings, Grant, Coombs, Joseph, Buell, C. Robin, Enciso‐Rodríguez, Felix, Douches, David S.

Source: Crop science. 61(5):3392-3414

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131026635.0x000001&indx=1&recIds=ETOCvdc_100131026635.0x000001

Preliminary evaluation of wild bean (Phaseolus spp.) germplasm for resistance to Fusarium cuneirostrum and Fusarium oxysporum

Authors: Haus, Miranda J., Pierz, Logan D., Jacobs, Janette L., Wiersma, Andrew T., Awale, Halima E., Chilvers, Martin I., Buell, C. Robin, Cichy, Karen E.

Source: Crop science. 61(5):3264-3274

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131026526.0x000001&indx=1&recIds=ETOCvdc_100131026526.0x000001

Genome-wide evaluation of gene editing outcomes using CRISPR/Cas9 in seed propagated Camelina sativa and vegetatively propagated Solanum tuberosum.

Authors: Jayakody, Thilani B., Zarka, Daniel, Cho, Keun Ho, Jensen, Jacob, Sikora, Samantha, Buell, C. Robin, Douches, David S., Nadakuduti, Satya Swathi

Source: Frontiers in Plant Science; 2024, p1-16, 16p

Subject Terms: SOMATIC mutation, WHOLE genome sequencing, GENOME editing, FOOD crops, TRANSGENIC plants, POTATOES

k‐mer genome‐wide association study for anthracnose and BCMV resistance in a Phaseolus vulgaris Andean Diversity Panel.

Authors: Wiersma, Andrew T., Hamilton, John P., Vaillancourt, Brieanne, Brose, Julia, Awale, Halima E., Wright, Evan M., Kelly, James D., Buell, C. Robin

Source: Plant Genome; Dec2024, Vol. 17 Issue 4, p1-17, 17p

Identification of genes associated with abiotic stress tolerance in sweetpotato using weighted gene co‐expression network analysis

Authors: Kitavi, Mercy, Gemenet, Dorcus C., Wood, Joshua C., Hamilton, John P., Wu, Shan, Fei, Zhangjun, Khan, Awais, Buell, C. Robin

Source: Plant direct. 7(10)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100196395573.0x000001&indx=1&recIds=ETOCvdc_100196395573.0x000001

Genetic variation in a tepary bean (Phaseolus acutifolius A. Gray) diversity panel reveals loci associated with biotic stress resistance

Authors: Bornowski, Nolan, Hart, John P., Palacios, Ana Vargas, Ogg, Barry, Brick, Mark A., Hamilton, John P., Beaver, James S., Buell, C. Robin, Porch, Timothy

Source: œplant genome. 16(3)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100192724166.0x000001&indx=1&recIds=ETOCvdc_100192724166.0x000001

Transcriptome‐based identification and functional characterization of iridoid synthase involved in monotropein biosynthesis in blueberry

Authors: Lawas, Lovely Mae F., Kamileen, Mohamed O., Buell, C. Robin, O'Connor, Sarah E., Leisner, Courtney P.

Source: Plant direct. 7(7)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100188552839.0x000001&indx=1&recIds=ETOCvdc_100188552839.0x000001

'Simple Tidy GeneCoEx': A gene co‐expression analysis workflow powered by tidyverse and graph‐based clustering in R

Authors: Li, Chenxin, Deans, Natalie C., Buell, C. Robin

Source: œplant genome. 16(2)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185948654.0x000001&indx=1&recIds=ETOCvdc_100185948654.0x000001

An image‐based technique for automated root disease severity assessment using PlantCV

Authors: Pierz, Logan D., Heslinga, Dilyn R., Buell, C. Robin, Haus, Miranda J.

Source: Applications in plant sciences. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175767801.0x000001&indx=1&recIds=ETOCvdc_100175767801.0x000001

Chromosome‐scale Salvia hispanica L. (Chia) genome assembly reveals rampant Salvia interspecies introgression.

Authors: Brose, Julia, Hamilton, John P., Schlecht, Nicholas, Zhao, Dongyan, Mejía‐Ponce, Paulina M., Cruz‐Pérez, Arely, Vaillancourt, Brieanne, Wood, Joshua C., Edger, Patrick P., Montes‐Hernandez, Salvador, de Rosas, Guillermo Orozco, Hamberger, Björn, Cibrian‐Jaramillo, Angélica, Buell, C. Robin

Source: Plant Genome; Sep2024, Vol. 17 Issue 3, p1-16, 16p

Targeted genotyping‐by‐sequencing of potato and data analysis with R/polyBreedR.

Authors: Endelman, Jeffrey B., Kante, Moctar, Lindqvist‐Kreuze, Hannele, Kilian, Andrzej, Shannon, Laura M., Caraza‐Harter, Maria V., Vaillancourt, Brieanne, Mailloux, Kathrine, Hamilton, John P., Buell, C. Robin

Source: Plant Genome; Sep2024, Vol. 17 Issue 3, p1-13, 13p

Quantitative Single-Cell Mass Spectrometry Provides a Highly Resolved Analysis of Natural Product Biosynthesis Partitioning in Plants.

Authors: Vu, Anh Hai, Kang, Moonyoung, Wurlitzer, Jens, Heinicke, Sarah, Li, Chenxin, Wood, Joshua C., Grabe, Veit, Buell, C. Robin, Caputi, Lorenzo, O'Connor, Sarah E.

Source: Journal of the American Chemical Society; 8/28/2024, Vol. 146 Issue 34, p23891-23900, 10p

Anthracnose and bean common mosaic necrosis virus resistance in wild and landrace Phaseolus vulgaris (L.) genetic stocks.

Authors: Awale, Halima E., Wiersma, Andrew T., Wright, Evan M., Buell, C. Robin, Kelly, James D., Cichy, Karen A., Haus, Miranda J.

Source: Crop Science; Jul2024, Vol. 64 Issue 4, p2116-2125, 10p

Subject Terms: ANTHRACNOSE, MOSAIC viruses, COMMON bean, NATURAL immunity, BEANS, CROP improvement, GENETIC variation, GERMPLASM

Company/Entity: UNITED States. Dept. of Agriculture

REPLY TO HUANG ET AL. : Avoiding “one-size-fits-all” approaches to variant discovery

Authors: Hardigan, Michael A., Laimbeer, F. Parker E., Hamilton, John P., Vaillancourt, Brieanne, Douches, David S., Farré, Eva M., Veilleux, Richard E., Buell, C. Robin

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Jul 01. 115(28), E6394-E6395.

Access URL: https://www.jstor.org/stable/26510919