Loss of MMR and TGFBR2 Increases the Susceptibility to Microbiota-Dependent Inflammation-Associated Colon Cancer

Authors: Tosti, Elena, Almeida, Ana S., Tran, Tam T.T., Barbachan e Silva, Mariel, Broin, Pilib Ó., Dubin, Robert, Chen, Ken, Beck, Amanda P., Mclellan, Andrew S., Vilar, Eduardo, Golden, Aaron, O’Toole, Paul W., Edelmann, Winfried

Source: In Cellular and Molecular Gastroenterology and Hepatology 2022 14(3):693-717

Genes regulated by BCL11B during T‐cell development are enriched for de novo mutations found in schizophrenia patients

Authors: Fahey, Laura, Donohoe, Gary, Broin, Pilib Ó., Morris, Derek W.

Source: American journal of medical genetics.Part B.Neuropsychiatric genetics. 183(6):370-379

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100108037081.0x000001&indx=1&recIds=ETOCvdc_100108037081.0x000001

Clinical and molecular significance of microvascular inflammation in transplant kidney biopsies

Authors: Gupta, Anjali, Broin, Pilib Ó., Bao, Yi, Pullman, James, Kamal, Layla, Ajaimy, Maria, Lubetzky, Michelle, Colovai, Adriana, Schwartz, Daniel, de Boccardo, Graciela, Golden, Aaron, Akalin, Enver

Source: In Kidney International January 2016 89(1):217-225

Increased intragraft rejection–associated gene transcripts in patients with donor-specific antibodies and normal biopsies

Authors: Hayde, Nicole, Broin, Pilib Ó., Bao, Yi, de Boccardo, Graciela, Lubetzky, Michelle, Ajaimy, Maria, Pullman, James, Colovai, Adriana, Golden, Aaron, Akalin, Enver ^*

Source: In Kidney International September 2014 86(3):600-609

Predictive modelling of brain disorders with magnetic resonance imaging: A systematic review of modelling practices, transparency, and interpretability in the use of convolutional neural networks.

Authors: O'Connell, Shane, Cannon, Dara M., Broin, Pilib Ó.

Source: Human Brain Mapping; Dec2023, Vol. 44 Issue 18, p6561-6574, 14p

Subject Terms: CONVOLUTIONAL neural networks, MAGNETIC resonance imaging, PREDICTION models, DEEP learning, ALZHEIMER'S disease, CEREBRAL amyloid angiopathy

Genes positively regulated by Mef2c in cortical neurons are enriched for common genetic variation associated with IQ and educational attainment.

Authors: Fahey, Laura, Ali, Deema, Donohoe, Gary, Broin, Pilib Ó, Morris, Derek W

Source: Human Molecular Genetics; 11/15/2023, Vol. 32 Issue 22, p3194-3203, 10p

Computational identification of variables in neonatal vocalizations predictive for postpubertal social behaviors in a mouse model of 16p11.2 deletion

Authors: Nakamura, Mitsuteru, Ye, Kenny, e Silva, Mariel Barbachan, Yamauchi, Takahira, Hoeppner, Daniel J., Fayyazuddin, Amir, Kang, Gina, Yuda, Emi A., Nagashima, Masako, Enomoto, Shingo, Hiramoto, Takeshi, Sharp, Richard, Kaneko, Itaru, Tajinda, Katsunori, Adachi, Megumi, Mihara, Takuma, Tokuno, Shinichi, Geyer, Mark A., Broin, Pilib Ó, Matsumoto, Mitsuyuki, Hiroi, Noboru

Source: Molecular Psychiatry; 20240101, Issue: Preprints p1-11, 11p

The Wasp System: An open source environment for managing and analyzing genomic data

Authors: McLellan, Andrew S., Dubin, Robert A., Jing, Qiang, Broin, Pilib Ó, Moskowitz, David, Suzuki, Masako, Calder, R. Brent, Hargitai, Joseph, Golden, Aaron, Greally, John M.

Source: In Genomics December 2012 100(6):345-351

An Integrated Genome Screen Identifies the Wnt Signaling Pathway as a Major Target of WT1

Authors: Kim, Marianne K.-H., McGarry, Thomas J., Broin, Pilib O., Flatow, Jared M., Golden, Aaron A.-J., Licht, Jonathan D., Vogt, Peter K.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2009 Jul 01. 106(27), 11154-11159.

Access URL: https://www.jstor.org/stable/40483764

Altered expression of ACOX2 in non-small cell lung cancer.

Authors: Sui, Jane S. Y., Martin, Petra, Keogh, Anna, Murchan, Pierre, Ryan, Lisa, Nicholson, Siobhan, Cuffe, Sinead, Broin, Pilib Ó, Finn, Stephen P., Fitzmaurice, Gerard J., Ryan, Ronan, Young, Vincent, Gray, Steven G.

Source: BMC Pulmonary Medicine; 8/23/2022, Vol. 22 Issue 1, p1-21, 21p

CCPlotR: an R package for the visualization of cell–cell interactions.

Authors: Ennis, Sarah^1,2,3 s.ennis6@universityofgalway.ie, Broin, Pilib Ó^1,2, Szegezdi, Eva^1,3 s.ennis6@universityofgalway.ie

Source: Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-3. 3p.

Subject Terms: *CELL communication, *VISUALIZATION, *COMPUTER software, *COMPUTATIONAL biology, *BIOINFORMATICS

Integrative Metabolic Signatures for Hepatic Radiation Injury.

Authors: Kurland, Irwin Jack¹, Broin, Pilib Ó.², Golden, Aaron², Su, Gang³, Meng, Fan³, Liu, Laibin⁴, Mohney, Robert⁵, Kulkarni, Shilpa⁴, Guha, Chandan⁴ cguhamd@gmail.com

Source: PLoS ONE. Jun2015, Vol. 10 Issue 6, p1-27. 27p.

Subject Terms: *LIVER injuries, *METABOLISM, *LIVER radiography, *DNA damage, *BIOMARKERS

Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach.

Authors: Broin, Pilib Ó.^1,2, Smith, Terry J.¹, Golden, Aaron A. J.^1,3 aaron.golden@einstein.yu.edu

Source: BMC Bioinformatics. 2015, Vol. 16 Issue 1, p1-12. 12p. 8 Diagrams, 3 Charts, 1 Graph.

Subject Terms: *TRANSCRIPTION factors, *BINDING sites, *GENETIC algorithms, *ALGORITHMS, *CLUSTER analysis (Statistics)

Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene

Authors: Thomas Brandon J, Rubio Eric D, Krumm Niklas, Broin Pilib Ó, Bomsztyk Karol, Welcsh Piri, Greally John M, Golden Aaron A, Krumm Anton

Source: Epigenetics & Chromatin, Vol 4, Iss 1, p 14 (2011)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://www.epigeneticsandchromatin.com/content/4/1/14; https://doaj.org/toc/1756-8935

Access URL: https://doaj.org/article/b73d9d4b4fae4b3588c19ff5280edc8c

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Genes influenced by MEF2C contribute to neurodevelopmental disease via gene expression changes that affect multiple types of cortical excitatory neurons.

Authors: Cosgrove, Donna, Whitton, Laura, Fahey, Laura, Broin, Pilib Ó, Donohoe, Gary, Morris, Derek W

Source: Human Molecular Genetics; Jun2021, Vol. 30 Issue 11, p961-970, 10p

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