Characterizing the SARS-CoV-2 antibody response and associations with patient factors: Serological profiling of participants enrolled in the GENCOV study

Authors: Morgan, Gregory ^{a, b, c}, Fung, Chun Yiu Jordan ^{a, b}, Gingras, Anne-Claude ^{a, d}, Colwill, Karen ^a, Briollais, Laurent ^a, Frangione, Erika ^{a, b}, Wolday, Dawit ^e, Qi, Freda ^a, Pasculescu, Adrian ^a, Delgado-Brand, Melanie ^a, Mailhot, Genevieve ^f, Tursun, Tulunay ^a, Arnoldo, Saranya ^{c, g}, Bearss, Erin ^{h, i}, Binnie, Alexandra ^j, Borgundvaag, Bjug ^k, Casalino, Selina ^{a, b}, Chowdhary, Sunakshi ^l, Dagher, Marc ^{i, m}, Devine, Luke ^{n, o}, Elliott, Lloyd T. ^p, Friedman, Steven M. ^{i, q}, Khan, Zeeshan ^r, Lapadula, Elisa ^{a, b}, MacDonald, Georgia ^{a, b}, Mazzulli, Tony ^{c, s}, McLeod, Shelley L ^{i, k}, Mighton, Chloe ^{t, u}, Nirmalanathan, Konika ^q, Richardson, David ^g, Stern, Seth ^r, Taher, Ahmed ^{r, v}, Young, Juliet ^{a, b}, Lerner-Ellis, Jordan ^{a, b, c}, Taher, Jennifer ^{b, c, ⁎}

Source: In Clinical Biochemistry January 2025 135

Bayesian Estimation of Two-Part Joint Models for a Longitudinal Semicontinuous Biomarker and a Terminal Event with R-INLA: Interests for Cancer Clinical Trial Evaluation

Authors: Rustand, Denis, van Niekerk, Janet, Rue, Håvard, Tournigand, Christophe, Rondeau, Virginie, Briollais, Laurent

Subject Terms: Statistics - Methodology, Statistics - Applications

Access URL: http://arxiv.org/abs/2010.13704

The scalable Birth-Death MCMC Algorithm for Mixed Graphical Model Learning with Application to Genomic Data Integration

Authors: Wang, Nanwei, Briollais, Laurent, Massam, Helene

Subject Terms: Statistics - Machine Learning, Computer Science - Machine Learning, Statistics - Applications

Access URL: http://arxiv.org/abs/2005.04139

Highly efficient reprogrammable mouse lines with integrated reporters to track the route to pluripotency

Authors: Elbaz, Judith, Puri, Mira C., Faiz, Maryam, Bang, K. W. Annie, Nguyen, Lena, Makovoz, Bar, Gertsenstein, Marina, Hussein, Samer M. I., Zandstra, Peter W., Briollais, Laurent, Shakiba, Nika, Nagy, Andras

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Dec 01. 119(49), 1-9.

Access URL: https://www.jstor.org/stable/27209453

The scalable birth—death MCMC algorithm for mixed graphical model learning with application to genomic data integration

Authors: Wang, Nanwei, Massam, Hélène, Gao, Xin, Briollais, Laurent

Source: Annals of applied statistics. 17(3):1958-1983

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN633499493&indx=1&recIds=ETOCRN633499493

A Bayes Factor Approach with Informative Prior for Rare Genetic Variant Analysis from Next Generation Sequencing Data

Authors: Xu, Jingxiong, Xu, Wei, Briollais, Laurent

Subject Terms: Statistics - Applications

Access URL: http://arxiv.org/abs/2002.08505

A Competing Risks Model with Binary Time Varying Covariates for Estimation of Breast Cancer Risks in BRCA1 Families

Authors: Choi, Yun-Hee, Jung, Hae, Buys, Saundra, Daly, Mary, John, Esther, Hopper, John, Andrulis, Irene, Terry, Mary-Beth, Briollais, Laurent

Subject Terms: Statistics - Methodology, Statistics - Applications

Access URL: http://arxiv.org/abs/2002.05249

Public knowledge of SARS-CoV-2 serological and viral lineage laboratory testing and result interpretation: A GENCOV study cross-sectional survey

Authors: Morgan, Gregory, Briollais, Laurent, Clausen, Marc, Casalino, Selina, Mighton, Chloe, Chowdhary, Sunakshi, Frangione, Erika, Fung, Chun Yiu Jordan, Arnoldo, Saranya, Bearss, Erin, Binnie, Alexandra, Borgundvaag, Bjug, Dagher, Marc, Devine, Luke, Friedman, Steven M, Khan, Zeeshan, McGeer, Allison, McLeod, Shelley L, Richardson, David, Stern, Seth, Taher, Ahmed, Wong, Iris, Zarei, Natasha, Bombard, Yvonne, Lerner-Ellis, Jordan, Taher, Jennifer

Source: In Clinical Biochemistry August 2023 118

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Analyzing Genome-wide Association Study Data with the R Package genMOSS

Authors: Friedlander, Matthew, Dobra, Adrian, Massam, Helene, Briollais, Laurent

Subject Terms: Statistics - Computation, Quantitative Biology - Quantitative Methods, 62-07 (Primary)

Access URL: http://arxiv.org/abs/1611.07537

Variation in the risk of colorectal cancer in families with Lynch syndrome: a retrospective cohort study

Authors: Win, Aung Ko, Dowty, James G., Reece, Jeanette C., Lee, Grant, Templeton, Allyson S., Plazzer, John-Paul, Buchanan, Daniel D., Akagi, Kiwamu, Aksoy, Seçil, Alonso, Angel, Alvarez, Karin, Amor, David J., Ankathil, Ravindran, Aretz, Stefan, Arnold, Julie L., Aronson, Melyssa, Austin, Rachel, Backman, Ann-Sofie, Bajwa-ten Broeke, Sanne W., Barca-Tierno, Verónica, Barwell, Julian, Bernstein, Inge, Berthet, Pascaline, Betz, Beate, Bignon, Yves-Jean, Boisjoli, Talya, Bonadona, Valérie, Briollais, Laurent, Brunet, Joan, Bucksch, Karolin, Buecher, Bruno, Buettner, Reinhard, Burn, John, Caldés, Trinidad, Capella, Gabriel, Caron, Olivier, Casey, Graham, Chew, Min H., Choi, Yun-hee, Church, James, Clendenning, Mark, Colas, Chrystelle, Cops, Elisa J., Coupier, Isabelle, Cruz-Correa, Marcia, de la Chapelle, Albert, de Wind, Niels, Dębniak, Tadeusz, Della Valle, Adriana, Delnatte, Capuccine, Dhooge, Marion, Dominguez-Valentin, Mev, Drouet, Youenn, Duijkers, Floor A., Engel, Christoph, Esperon, Patricia, Evans, D. Gareth, Falcón de Vargas, Aída, Figueiredo, Jane C, Foulkes, William, Fourme, Emmanuelle, Frebourg, Thierry, Gallinger, Steven, Garre, Pilar, Genuardi, Maurizio, Gerdes, Anne-Marie, Gima, Lauren M., Giraud, Sophie, Goodwin, Annabel, Görgens, Heike, Green, Kate, Guillem, Jose, Guillén-Ponce, Carmen, Guimbaud, Roselyne, Guindalini, Rodrigo S.C., Half, Elizabeth E., Hall, Michael J, Hampel, Heather, Hansen, Thomas V.O., Heinimann, Karl, Hes, Frederik J., Hill, James, Ho, Judy W.C., Holinski-Feder, Elke, Hoogerbrugge, Nicoline, Hüneburg, Robert, Huntley, Vanessa, James, Paul A., Jensen, Uffe B, John, Thomas, Juhari, Wan K.W., Kalady, Matthew, Kastrinos, Fay, Kloor, Matthias, Kohonen-Corish, Maija RJ, Krogh, Lotte N., Kupfer, Sonia S., Ladabaum, Uri, Lagerstedt-Robinson, Kristina, Lalloo, Fiona, Lasset, Christine, Latchford, Andrew, Laurent-Puig, Pierre, Lautrup, Charlotte K., Leggett, Barbara A., Lejeune, Sophie, LeMarchand, Loic, Ligtenberg, Marjolijn, Lindor, Noralane, Loeffler, Markus, Longy, Michel, Lopez, Francisco, Lowery, Jan, Lubiński, Jan, Lucassen, Anneke M, Lynch, Patrick M., Malińska, Karolina, Matsubara, Nagahide, Mecklin, Jukka-Pekka, Møller, Pål, Monahan, Kevin, Morrison, Patrick J., Nattermann, Jacob, Navarro, Matilde, Neffa, Florencia, Neklason, Deborah, Newcomb, Polly A., Ngeow, Joanne, Nichols, Cassandra, Nielsen, Maartje, Nixon, Dawn M., Nogues, Catherine, Okkels, Henrik, Olschwang, Sylviane, Pachter, Nicholas, Pai, Rish K., Palmero, Edenir I., Pande, Mala, Parry, Susan, Patel, Swati G., Pearlman, Rachel, Perne, Claudia, Pineda, Marta, Poplawski, Nicola K, Pylvänäinen, Kirsi, Qiu, Jay, Rahner, Nils, Ramesar, Raj, Rasmussen, Lene J., Redler, Silke, Reis, Rui M., Ricciardiello, Luigi, Rogoża-Janiszewska, Emilia, Rosty, Christophe, Samadder, N. Jewel, Sampson, Julian R., Schackert, Hans K., Schmiegel, Wolff, Schulmann, Karsten, Schuster, Helène, Scott, Rodney, Senter, Leigha, Seppälä, Toni T, Shtoyerman, Rakefet, Sijmons, Rolf H., Snyder, Carrie, Solomon, Ilana B., Soto, Jose Luis, Southey, Melissa C., Spigelman, Allan, Spirandelli, Florencia, Spurdle, Amanda B., Steinke-Lange, Verena, Stoffel, Elena M., Strassburg, Christian P., Sunde, Lone, Susman, Rachel, Syngal, Sapna, Tanakaya, Kohji, Tezcan, Gülçin, Therkildsen, Christina, Thibodeau, Steve, Tomita, Naohiro, Tucker, Katherine M., Tunca, Berrin, Turchetti, Daniela, Uhrhammer, Nancy, Utsunomiya, Joji, Vaccaro, Carlos, van Duijnhoven, Fränzel J.B., van Wanzeele, Meghan J., Vangala, Deepak B., Vasen, Hans F.A., von Knebel Doeberitz, Magnus, von Salomé, Jenny, Wadt, Karin A.W., Ward, Robyn L., Weitz, Jürgen, Weitzel, Jeffrey N., Williams, Heinric, Winship, Ingrid, Wise, Paul E., Wods, Julie, Woods, Michael O., Yamaguchi, Tatsuro, Zachariae, Silke, Zahary, Mohd N., Hopper, John L., Haile, Robert W., Macrae, Finlay A., Möslein, Gabriela, Jenkins, Mark A. ^*

Source: In The Lancet Oncology July 2021 22(7):1014-1022

Bayesian estimation of two‐part joint models for a longitudinal semicontinuous biomarker and a terminal event with INLA: Interests for cancer clinical trial evaluation

Authors: Rustand, Denis, van Niekerk, Janet, Rue, Håvard, Tournigand, Christophe, Rondeau, Virginie, Briollais, Laurent

Source: Biometrical journal. 65(4)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185959008.0x000001&indx=1&recIds=ETOCvdc_100185959008.0x000001

Large-scale whole exome sequencing studies identify two genes,CTSL and APOE, associated with lung cancer.

Authors: Xu, Jingxiong¹, Xu, Wei^2,3, Choi, Jiyeon⁴, Brhane, Yonathan¹, Christiani, David C.⁵, Kothari, Jui⁶, McKay, James⁷, Field, John K.⁸, Davies, Michael P. A.⁸, Liu, Geoffrey^2,3, Amos, Christopher I.^9,10, Hung, Rayjean J.^1,3, Briollais, Laurent^1,3, laurent@lunenfeld.ca

Source: PLoS Genetics; 9/22/2023, Vol. 19 Issue 9, p1-13, 13p

Sim1000G: a user-friendly genetic variant simulator in R for unrelated individuals and family-based designs

Authors: Dimitromanolakis, Apostolos, Xu, Jingxiong, Krol, Agnieszka, Briollais, Laurent

Source: BMC bioinformatics. 20(1):1-9

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185476411.0x000001&indx=1&recIds=ETOCvdc_100185476411.0x000001

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Modeling of Successive Cancer Risks in Lynch Syndrome Families in the Presence of Competing Risks Using Copulas

Authors: Choi, Yun-Hee, Briollais, Laurent, Win, Aung K., Hopper, John, Buchanan, Dan, Jenkins, Mark, Lakhal-Chaieb, Lajmi

Source: Biometrics, 2017 Mar 01. 73(1), 271-282.

Access URL: https://www.jstor.org/stable/44695230

A BAYESIAN GRAPHICAL MODEL FOR GENOME-WIDE ASSOCIATION STUDIES (GWAS)

Authors: Briollais, Laurent, Dobra, Adrian, Liu, Jinnan, Friedlander, Matt, Ozcelik, Hilmi, Massam, Hélène

Source: The Annals of Applied Statistics, 2016 Jun 01. 10(2), 786-811.

Access URL: http://www.jstor.org/stable/43957077

A marginalized two‐part joint model for a longitudinal biomarker and a terminal event with application to advanced head and neck cancers.

Authors: Rustand, Denis^1,2 (AUTHOR) denis@rustand.fr, Briollais, Laurent³ (AUTHOR), Rondeau, Virginie¹ (AUTHOR)

Source: Pharmaceutical Statistics. Jan/Feb2024, Vol. 23 Issue 1, p60-80. 21p.

Subject Terms: *HEAD & neck cancer, *BIOMARKERS, *TREATMENT effectiveness, *CLINICAL trials, *PANITUMUMAB

Prevalence of Germline Mutations in Cancer Predisposition Genes in Patients With Pancreatic Cancer

Authors: Grant, Robert C., Selander, Iris, Connor, Ashton A., Selvarajah, Shamini, Borgida, Ayelet, Briollais, Laurent, Petersen, Gloria M., Lerner-Ellis, Jordan, Holter, Spring, Gallinger, Steven

Source: In Gastroenterology March 2015 148(3):556-564