The Cdc48 N-terminal domain has a molecular switch that mediates the Npl4-Ufd1-Cdc48 complex formation

Authors: Oppenheim, Tal, Radzinski, Meytal, Braitbard, Merav, Brielle, Esther S., Yogev, Ohad, Goldberger, Eliya, Yesharim, Yarden, Ravid, Tommer, Schneidman-Duhovny, Dina, Reichmann, Dana

Source: In Structure 6 July 2023 31(7):764-779

Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2

Authors: Slavin, Moriya, Zamel, Joanna, Zohar, Keren, Eliyahu, Tsiona, Braitbard, Merav, Brielle, Esther, Baraz, Leah, Stolovich-Rain, Miri, Friedman, Ahuva, Wolf, Dana G., Rouvinski, Alexander, Linial, Michal, Schneidman-Duhovny, Dina, Kalisman, Nir

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Aug . 118(34), 1-9.

Access URL: https://www.jstor.org/stable/27075521

Structure of the Human Core Centromeric Nucleosome Complex

Authors: Allu, Praveen Kumar, Dawicki-McKenna, Jennine M., Van Eeuwen, Trevor, Slavin, Moriya, Braitbard, Merav, Xu, Chen, Kalisman, Nir, Murakami, Kenji, Black, Ben E.

Source: In Current Biology 19 August 2019 29(16):2625-2639

Integrative Structure Modeling: Overview and Assessment

Authors: Braitbard, Merav, Schneidman-Duhovny, Dina, Kalisman, Nir

Source: Annual review of biochemistry. 88:113-136

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN621233085&indx=1&recIds=ETOCRN621233085

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

Authors: Lensink, Marc F., Brysbaert, Guillaume, Nadzirin, Nurul, Velankar, Sameer, Chaleil, Raphaël A. G., Gerguri, Tereza, Bates, Paul A., Laine, Elodie, Carbone, Alessandra, Grudinin, Sergei, Kong, Ren, Liu, Ran‐Ran, Xu, Xi‐Ming, Shi, Hang, Chang, Shan, Eisenstein, Miriam, Karczynska, Agnieszka, Czaplewski, Cezary, Lubecka, Emilia, Lipska, Agnieszka, Krupa, Paweł, Mozolewska, Magdalena, Golon, Łukasz, Samsonov, Sergey, Liwo, Adam, Crivelli, Silvia, Pagès, Guillaume, Karasikov, Mikhail, Kadukova, Maria, Yan, Yumeng, Huang, Sheng‐You, Rosell, Mireia, Rodríguez‐Lumbreras, Luis A., Romero‐Durana, Miguel, Díaz‐Bueno, Lucía, Fernandez‐Recio, Juan, Christoffer, Charles, Terashi, Genki, Shin, Woong‐Hee, Aderinwale, Tunde, Maddhuri Venkata Subraman, Sai Raghavendra, Kihara, Daisuke, Kozakov, Dima, Vajda, Sandor, Porter, Kathryn, Padhorny, Dzmitry, Desta, Israel, Beglov, Dmitri, Ignatov, Mikhail, Kotelnikov, Sergey, Moal, Iain H., Ritchie, David W., Chauvot de Beauchêne, Isaure, Maigret, Bernard, Devignes, Marie‐Dominique, Ruiz Echartea, Maria E., Barradas‐Bautista, Didier, Cao, Zhen, Cavallo, Luigi, Oliva, Romina, Cao, Yue, Shen, Yang, Baek, Minkyung, Park, Taeyong, Woo, Hyeonuk, Seok, Chaok, Braitbard, Merav, Bitton, Lirane, Scheidman‐Duhovny, Dina, Dapkūnas, Justas, Olechnovič, Kliment, Venclovas, Česlovas, Kundrotas, Petras J., Belkin, Saveliy, Chakravarty, Devlina, Badal, Varsha D., Vakser, Ilya A., Vreven, Thom, Vangaveti, Sweta, Borrman, Tyler, Weng, Zhiping, Guest, Johnathan D., Gowthaman, Ragul, Pierce, Brian G., Xu, Xianjin, Duan, Rui, Qiu, Liming, Hou, Jie, Ryan Merideth, Benjamin, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Koukos, Panagiotis I., Roel‐Touris, Jorge, Ambrosetti, Francesco, Geng, Cunliang, Schaarschmidt, Jörg, Trellet, Mikael E., Melquiond, Adrien S. J., Xue, Li, Jiménez‐García, Brian, Noort, Charlotte W., Honorato, Rodrigo V., Bonvin, Alexandre M. J. J., Wodak, Shoshana J.

Source: Proteins. 87(12):1200-1221

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100092837788.0x000001&indx=1&recIds=ETOCvdc_100092837788.0x000001

Cryo-EM structures of engineered active bc1-cbb3 type CIII2CIV super-complexes and electronic communication between the complexes.

Authors: Steimle, Stefan, van Eeuwen, Trevor, Ozturk, Yavuz, Kim, Hee Jong, Braitbard, Merav, Selamoglu, Nur, Garcia, Benjamin A., Schneidman-Duhovny, Dina, Murakami, Kenji, Daldal, Fevzi

Source: Nature Communications; 2/10/2021, Vol. 12 Issue 1, p1-14, 14p

Subject Terms: TELECOMMUNICATION, GRAM-negative bacteria, OXIDASES, ELECTRONS

Dynamic Evolution of the Cthrc1 Genes, a Newly Defined Collagen-Like Family.

Authors: Leclère, Lucas¹, lucas.leclere@obs-vlfr.fr, Nir, Tal S², Bazarsky, Michael², Braitbard, Merav³, Schneidman-Duhovny, Dina^3,4, Gat, Uri², lucas.leclere@obs-vlfr.fr

Source: Genome Biology & Evolution; Feb2020, Vol. 12 Issue 2, p3957-3970, 14p