EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data -- a concept description

Authors: Boiten, Jan-Willem, Ohmann, Christian, Adeniran, Ayodeji, Canham, Steve, Abadia, Monica Cano, Chassang, Gauthier, Chiusano, Maria Luisa, David, Romain, Fratelli, Maddalena, Gribbon, Phil, Holub, Petr, Ludwig, Rebecca, Mayrhofer, Michaela Th., Matei, Mihaela, Merchant, Arshiya, Panagiotopoulou, Maria, Pireddu, Luca, Pla, Alex Sanchez, Schlünder, Irene, Tsamis, George, Wagener, Harald

Subject Terms: Quantitative Biology - Other Quantitative Biology, Computer Science - Databases

Access URL: http://arxiv.org/abs/2207.14296

Sharing sensitive data in life sciences: an overview of centralized and federated approaches.

Authors: Rujano, Maria A¹ (AUTHOR), Boiten, Jan-Willem² (AUTHOR), Ohmann, Christian¹ (AUTHOR), Canham, Steve¹ (AUTHOR), Contrino, Sergio¹ (AUTHOR), David, Romain³ (AUTHOR), Ewbank, Jonathan³ (AUTHOR), Filippone, Claudia³ (AUTHOR), Connellan, Claire³ (AUTHOR), Custers, Ilse² (AUTHOR), Nuland, Rick van² (AUTHOR), Mayrhofer, Michaela Th⁴ (AUTHOR), Holub, Petr⁴ (AUTHOR), Álvarez, Eva García⁴ (AUTHOR), Bacry, Emmanuel⁵ (AUTHOR), Hughes, Nigel⁶ (AUTHOR), Freeberg, Mallory A⁷ (AUTHOR), Schaffhauser, Birgit⁸ (AUTHOR), Wagener, Harald⁹ (AUTHOR), Sánchez-Pla, Alex¹⁰ (AUTHOR)

Source: Briefings in Bioinformatics. Jul2024, Vol. 25 Issue 4, p1-16. 16p.

Subject Terms: *INFORMATION sharing, *DATA science, *MEDICAL informatics, *LIFE sciences, *HEALTH policy

"Be sustainable": EOSC‐Life recommendations for implementation of FAIR principles in life science data handling.

Authors: David, Romain, Rybina, Arina, Burel, Jean‐Marie, Heriche, Jean‐Karim, Audergon, Pauline, Boiten, Jan‐Willem, Coppens, Frederik, Crockett, Sara, Exter, Katrina, Fahrner, Sven, Fratelli, Maddalena, Goble, Carole, Gormanns, Philipp, Grantner, Tobias, Grüning, Björn, Gurwitz, Kim Tamara, Hancock, John M, Harmse, Henriette, Holub, Petr, Juty, Nick

Source: EMBO Journal; Dec2023, Vol. 42 Issue 23, p1-23, 23p

Subject Terms: LIFE sciences, OPEN scholarship, DIGITAL technology, SOFTWARE development tools, DATA management

A molecular informatics view on best practice in multi-parameter compound optimization

Authors: Lusher, Scott J., McGuire, Ross, Azevedo, Rita, Boiten, Jan-Willem, van Schaik, Rene C., de Vlieg, Jacob

Source: In Drug Discovery Today 2011 16(13):555-568

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

Authors: Wilkinson, Mark D., Dumontier, Michel, Jan Aalbersberg, Ijsbrand, Appleton, Gabrielle, Axton, Myles, Baak, Arie, Blomberg, Niklas, Boiten, Jan-Willem, da Silva Santos, Luiz Bonino, Bourne, Philip E., Bouwman, Jildau, Brookes, Anthony J., Clark, Tim, Crosas, Mercè, Dillo, Ingrid, Dumon, Olivier, Edmunds, Scott, Evelo, Chris T., Finkers, Richard, Gonzalez-Beltran, Alejandra, Gray, Alasdair J. G., Groth, Paul, Goble, Carole, Grethe, Jeffrey S., Heringa, Jaap, Hoen, Peter A. C. 't, Hooft, Rob, Kuhn, Tobias, Kok, Ruben, Kok, Joost, Lusher, Scott J., Martone, Maryann E., Mons, Albert, Packer, Abel L., Persson, Bengt, Rocca-Serra, Philippe, Roos, Marco, van Schaik, Rene, Sansone, Susanna-Assunta, Schultes, Erik, Sengstag, Thierry, Slater, Ted, Strawn, George, Swertz, Morris A., Thompson, Mark, van der Lei, Johan, van Mulligen, Erik, Waagmeester, Andra, Wittenburg, Peter, Wolstencroft, Katherine, Zhao, Jun, Mons, Barend

Source: Scientific data. 6(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131388651.0x000001&indx=1&recIds=ETOCvdc_100131388651.0x000001

FAIR in action - a flexible framework to guide FAIRification.

Authors: Welter, Danielle, Juty, Nick, Rocca-Serra, Philippe, Xu, Fuqi, Henderson, David, Gu, Wei, Strubel, Jolanda, Giessmann, Robert T., Emam, Ibrahim, Gadiya, Yojana, Abbassi-Daloii, Tooba, Alharbi, Ebtisam, Gray, Alasdair J. G., Courtot, Melanie, Gribbon, Philip, Ioannidis, Vassilios, Reilly, Dorothy S., Lynch, Nick, Boiten, Jan-Willem, Satagopam, Venkata

Source: Scientific Data; 5/19/2023, Vol. 10 Issue 1, p1-9, 9p

Subject Terms: COVID-19 pandemic, PUBLIC-private sector cooperation

An iterative and interdisciplinary categorisation process towards FAIRer digital resources for sensitive life-sciences data.

Authors: David, Romain, Ohmann, Christian, Boiten, Jan-Willem, Abadía, Mónica Cano, Bietrix, Florence, Canham, Steve, Chiusano, Maria Luisa, Dastrù, Walter, Laroquette, Arnaud, Longo, Dario, Mayrhofer, Michaela Th., Panagiotopoulou, Maria, Richard, Audrey S., Goryanin, Sergey, Verde, Pablo Emilio

Source: Scientific Reports; 12/5/2022, Vol. 12 Issue 1, p1-11, 11p

Subject Terms: LIFE sciences, COMMUNITIES, SOFTWARE development tools

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Integrated Project Views:Decision Support Platformfor Drug Discovery Project Teams.

Authors: Baede, Eric J.¹, den Bekker, Ernest¹, Boiten, Jan-Willem¹, Cronin, Deborah¹, van Gammeren, Rob¹, de Vlieg, Jacob¹

Source: Journal of Chemical Information & Modeling; Jun2012, Vol. 52 Issue 6, p1438-1449, 12p