Search Results - "Bisulfite sequencing"

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 19(3):1507-1522 Jun, 2022

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8

Academic Journal

Annelid methylomes reveal ancestral developmental and aging-associated epigenetic erosion across Bilateria

Authors: Kero Guynes, Luke A. Sarre, Allan M. Carrillo-Baltodano, Billie E. Davies, Lan Xu, Yan Liang, Francisco M. Martín-Zamora, Paul J. Hurd, Alex de Mendoza, José M. Martín-Durán

Source: Genome Biology, Vol 25, Iss 1, Pp 1-29 (2024)

Subject Terms: DNA methylation, Whole-genome bisulfite sequencing, EM-seq, Annelida, Spiralia, Spiral cleavage, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/20a431888cef488aa839a5075a92be08

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9

Academic Journal

The response to influenza vaccination is associated with DNA methylation-driven regulation of T cell innate antiviral pathways

Authors: Hongxiang Fu, Harry Pickering, Liudmilla Rubbi, Ted M. Ross, Wanding Zhou, Elaine F. Reed, Matteo Pellegrini

Source: Clinical Epigenetics, Vol 16, Iss 1, Pp 1-14 (2024)

Subject Terms: DNA methylation, Influenza virus, Influenza vaccine, Targeted bisulfite sequencing, RNA sequencing, Cell-type deconvolution, Medicine, Genetics, QH426-470

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Relation: https://doaj.org/toc/1868-7083

Access URL: https://doaj.org/article/299d90b0d0a0472f87d41bcd52d6438d

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10

Academic Journal

“Whole genome bisulfite sequencing of serum extracellular vesicle DNA identifies alterations in mitochondrial DNA methylation in early onset preeclampsia”

Authors: Shinde, Uma ^a, Khambata, Kushaan ^b, Raut, Sanketa ^b, Rao, Aishwarya ^b, Bansal, Vandana ^c, Mayadeo, Niranjan ^d, Das, Dhanjit Kumar ^b, Madan, Taruna ^e, Gunasekaran, Vinoth Prasanna ^{a, ⁎}, Balasinor, Nafisa Huseni ^{b, ⁎}

Source: In Clinica Chimica Acta 1 March 2025 569

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11

Academic Journal

DNA methylation-based age estimation from semen: Genome-wide marker identification and model development

Authors: Li, Ya ^a, Liu, Xiaozhao ^{b, c, d}, Chen, Maomin ^a, Yi, Shaohua ^a, He, Ximiao ^{b, c, d}, Xiao, Chao ^{a, ⁎}, Huang, Daixin ^{a, ⁎}

Source: In Forensic Science International: Genetics March 2025 76

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12

Academic Journal

bsgenova: an accurate, robust, and fast genotype caller for bisulfite-sequencing data

Authors: Yance Feng, Fei Gao

Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-12 (2024)

Subject Terms: Genotype, SNP, BS-seq, Bisulfite-sequencing, DNA methylation, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

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Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/2349dac364e44697a2517e80cd671e97

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13

Academic Journal

LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA

Source: Genome Biology, Vol 25, Iss 1, Pp 1-18 (2024)

Subject Terms: Linear amplification, Bisulfite sequencing, Low-input DNA, Cell-free DNA, Cancer detection, Biology (General), QH301-705.5, Genetics, QH426-470

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Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/5bb50822efdf457baaf29b14934cc113

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14

Academic Journal

Pregnancy induced hypertension and umbilical cord blood DNA methylation in newborns: an epigenome-wide DNA methylation study

Authors: Xiaojun Zhu, Peiyue Jiang, Xia Ying, Xueling Tang, Youcai Deng, Xinghong Gao, Xiaofu Yang

Source: BMC Pregnancy and Childbirth, Vol 24, Iss 1, Pp 1-13 (2024)

Subject Terms: Pregnancy induced hypertension, Umbilical cord blood, Whole-genome bisulfite sequencing, Gynecology and obstetrics, RG1-991

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Relation: https://doaj.org/toc/1471-2393

Access URL: https://doaj.org/article/07db3e8de0d94c20b71d539f74811fce

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15

Academic Journal

Identification of DNA Methylation Differences in Pituitary Tissues of Sichuan White Geese Using Whole-Genome Bisulfite Sequencing (WGBS)

Authors: Lin Ma, Xianzhi Zhao, Guoda A, Tongtong Song, Meng Wu, Zhihao Yan, Min Xiao, Wenbo Jiang, Yixiao Gao, Haiwei Wang, Zhuping Chen, Keshan Zhang, Jiajia Xue, Yi Luo, Chao Wang, Youhui Xie, Ying Chen, Guangliang Gao, Qigui Wang

Source: Biology, Vol 14, Iss 2, p 154 (2025)

Subject Terms: Sichuan white geese, egg-laying traits, pituitary, whole-genome bisulfite sequencing (WGBS), Biology (General), QH301-705.5

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Relation: https://www.mdpi.com/2079-7737/14/2/154; https://doaj.org/toc/2079-7737

Access URL: https://doaj.org/article/a0a417200ac34f528cc00406cb15eb0d

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16

Academic Journal

Data-Driven Identification of Early Cancer-Associated Genes via Penalized Trans-Dimensional Hidden Markov Models

Authors: Saeedeh Hajebi Khaniki, Farhad Shokoohi

Source: Biomolecules, Vol 15, Iss 2, p 294 (2025)

Subject Terms: DNA methylation, accelerated failure time, penalized regression, bisulfite sequencing, survival analysis, Microbiology, QR1-502

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Relation: https://www.mdpi.com/2218-273X/15/2/294; https://doaj.org/toc/2218-273X

Access URL: https://doaj.org/article/92de02a1bb8149f8b7870dd8de68cd09

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17

Academic Journal

Benchmarking strategies for CNV calling from whole genome bisulfite data in humans

Authors: Zhao, Shanghui ^{a, 1}, Xu, Dantong ^a, Cai, Jiali ^a, Shen, Qingpeng ^a, He, Mingran ^a, Pan, Xiangchun ^a, Gao, Yahui ^a, Li, Jiaqi ^{a, b}, Yuan, Xiaolong ^{a, b, c, ⁎}

Source: In Computational and Structural Biotechnology Journal 2025 27:912-919

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18

Academic Journal

Regulation of de novo and maintenance DNA methylation by DNA methyltransferases in postimplantation embryos

Authors: Xu, Zhen, Shi, Jiajia ^‡, Chen, Qian ^‡, Yang, Shuting ^‡, Wang, Zilin, Xiao, Biao, Lai, Zhijian, Jing, Yumeng, Li, Yilin, Li, Xiajun ^∗

Source: In Journal of Biological Chemistry January 2025 301(1)

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19

eBook

Molecular World Today and Tomorrow: Recent Trends in Biological Sciences 2.0

Contributors: Zaman, Wajid

Subject Terms: climate change, crops, genetic improvement, HLH, PRE, fast-growth, shoot elongation, moso bamboo, transcription factor, flowering, AT-hook gene family, Juglans regia, hypocotyl, Phylogenetics, root-lesion nematode, genome, ultra-low DNA input, contigs, sequencing, BUSCO, diploid, TCP transcription factor, nodulation, nitrate concentration, anthocyanin biosynthesis, purple tomato, HY5, MBW, PIFs, phytochemicals, flavonoids, metastasis prevention, signaling pathways, sirtuins, SIRT6, gene expression, aging, inflammation, metabolism, aging pathomechanism, physical activity, proteomics, coconut cultivars, solid endosperm, maturation stages, carbohydrate and lipid metabolisms, TMT-SPS-MS3, cornea, mesenchymal stem cells, exosomes, corneal diseases, corneal regeneration, lenalidomide, pomalidomide, cereblon, bioinformatics, zinc finger, microarray, RNA-seq, teratogen, transcriptome, graph, analgesia, alloknesis, antinociception, interleukin-31 (IL-31), interleukin receptor A (IL-31RA), IL-31 receptor A-deficient (IL-31RAKI) mice, itch, pain, metabarcoding, bacterioplankton community, 16S rRNA, Candidatus Pelagibacter, Pseudoalteromonas, Vibrio, pathogenic bacteria, autophagy, nitrogen starvation, whole-genome bisulfite sequencing (WGBS), hormone, maize haploid, chromosome doubling, paclitaxel, caffeine–taurine, colchicine, anticancer, 5-fluorouracil, SSB, anticancer drug, single-stranded DNA-binding protein, SsbA, crystal structure, docking, conformational change, DNA extraction, complex samples, next-generation sequencing, metagenomics, microbiome, bioreactor, cucurbits, ethylene, omics, sex differentiation, female development, Primulina eburnea, MYB transcription factor, gene family, drought stress, genes, genomic resources, sea urchin, Computer science

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Access URL: https://directory.doabooks.org/handle/20.500.12854/137786
https://mdpi.com/books/pdfview/book/9021

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20

Academic Journal

Aberrant methylation of placental development genes in chorionic villi of spontaneous abortions with trisomy 16

Authors: О. Yu. Vasilyeva, E. N. Tolmacheva, A. E. Dmitriev, Ya. A. Darkova, E. A. Sazhenova, T. V. Nikitina, I. N. Lebedev, S. A. Vasilyev

Source: Вавиловский журнал генетики и селекции, Vol 28, Iss 2, Pp 198-203 (2024)

Subject Terms: aneuploidy, trisomy 16, dna methylation, chorionic villi, miscarriage, bisulfite sequencing, spontaneous abortions, Genetics, QH426-470

File Description: electronic resource

Relation: https://vavilov.elpub.ru/jour/article/view/4090; https://doaj.org/toc/2500-3259

Access URL: https://doaj.org/article/2ac1243c5f7443e7a449662c9762763c

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