Comparing and combining some popular NER approaches on Biomedical tasks

Authors: Verma, Harsh, Bergler, Sabine, Tahaei, Narjesossadat

Subject Terms: Computer Science - Computation and Language, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2305.19120

CLaC at SemEval-2023 Task 2: Comparing Span-Prediction and Sequence-Labeling approaches for NER

Authors: Verma, Harsh, Bergler, Sabine

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2305.03845

CLaCLab at SocialDisNER: Using Medical Gazetteers for Named-Entity Recognition of Disease Mentions in Spanish Tweets

Authors: Verma, Harsh, Bagherzadeh, Parsa, Bergler, Sabine

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2209.03528

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations

Authors: Chen, Qingyu, Allot, Alexis, Leaman, Robert, Doğan, Rezarta Islamaj, Du, Jingcheng, Fang, Li, Wang, Kai, Xu, Shuo, Zhang, Yuefu, Bagherzadeh, Parsa, Bergler, Sabine, Bhatnagar, Aakash, Bhavsar, Nidhir, Chang, Yung-Chun, Lin, Sheng-Jie, Tang, Wentai, Zhang, Hongtong, Tavchioski, Ilija, Pollak, Senja, Tian, Shubo, Zhang, Jinfeng, Otmakhova, Yulia, Yepes, Antonio Jimeno, Dong, Hang, Wu, Honghan, Dufour, Richard, Labrak, Yanis, Chatterjee, Niladri, Tandon, Kushagri, Laleye, Fréjus, Rakotoson, Loïc, Chersoni, Emmanuele, Gu, Jinghang, Friedrich, Annemarie, Pujari, Subhash Chandra, Chizhikova, Mariia, Sivadasan, Naveen, Lu, Zhiyong

Subject Terms: Computer Science - Digital Libraries, Computer Science - Computation and Language, Computer Science - Information Retrieval, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2204.09781

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective

Authors: Bergler Sabine, Kilicoglu Halil

Source: BMC Bioinformatics, Vol 9, Iss Suppl 11, p S10 (2008)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/fa6cafe64aa1496088f0e07efba02ed4

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U-Compare bio-event meta-service: compatible BioNLP event extraction services

Authors: Kano Yoshinobu, Björne Jari, Ginter Filip, Salakoski Tapio, Buyko Ekaterina, Hahn Udo, Cohen K Bretonnel, Verspoor Karin, Roeder Christophe, Hunter Lawrence E, Kilicoglu Halil, Bergler Sabine, Van Landeghem Sofie, Van Parys Thomas, Van de Peer Yves, Miwa Makoto, Ananiadou Sophia, Neves Mariana, Pascual-Montano Alberto, Özgür Arzucan, Radev Dragomir R, Riedel Sebastian, Sætre Rune, Chun Hong-Woo, Kim Jin-Dong, Pyysalo Sampo, Ohta Tomoko, Tsujii Jun'ichi

Source: BMC Bioinformatics, Vol 12, Iss 1, p 481 (2011)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/12/481; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/6892cc13206843fc8a2efed31a5d3b40

Biological event composition.

Authors: Kilicoglu, Halil¹ h•kilico@cse.concordia.ca, Bergler, Sabine¹

Source: BMC Bioinformatics. 2012, Vol. 13 Issue Suppl 11, p1-19. 19p. 4 Diagrams, 12 Charts.

Subject Terms: *NATURAL language processing, *SEMANTIC computing, *DATA mining, *MOLECULAR biology, *SEMANTICS

EFFECTIVE BIO-EVENT EXTRACTION USING TRIGGER WORDS AND SYNTACTIC DEPENDENCIES.

Authors: Kilicoglu, Halil¹, Bergler, Sabine¹

Source: Computational Intelligence. Nov2011, Vol. 27 Issue 4, p583-609. 27p.

Subject Terms: *EXTRACTION (Linguistics), *DEPENDENCY grammar, *PARSING (Computer grammar), *TEXT mining, *HEURISTIC programming

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Metonymy and Metaphor: Boundary Cases and the Role of a Generative Lexicon.

Authors: Bergler, Sabine

Source: Advances in Generative Lexicon Theory; 2013, p127-145, 19p

Feature Combination for Sentence Similarity.

Authors: Shareghi, Ehsan, Bergler, Sabine

Source: Advances in Artificial Intelligence (9783642384561); 2013, p150-161, 12p

Structure-aware topic clustering in social media.

Authors: Dubuc, Julien, Bergler, Sabine

Source: Proceedings of the 10th ACM Symposium: Document Engineering; 9/21/2010, p247-250, 4p

Image Query Expansion Using Semantic Selectional Restrictions.

Authors: El Demerdash, Osama, Bergler, Sabine, Kosseim, Leila

Source: Multilingual Information Access Evaluation II. Multimedia Experiments; 2010, p150-156, 7p

Image Retrieval by Inter-media Fusion and Pseudo-relevance Feedback.

Authors: El Demerdash, Osama, Kosseim, Leila, Bergler, Sabine

Source: Evaluating Systems for Multilingual & Multimodal Information Access; 2009, p605-611, 7p

The Role of Nominalizations in Prepositional Phrase Attachment in GENIA.

Authors: Schuman, Jonathan, Bergler, Sabine

Source: Advances in Artificial Intelligence: 21st Conference of the Canadian Society for Computational Studies of Intelligence, Canadian Ai 2008 Windsor, Canada, May 28-30, 2008 Proceedings; 2008, p271-282, 12p