On-line aptamer affinity solid-phase extraction capillary electrophoresis-mass spectrometry for the determination of SARS-CoV-2 nucleocapsid protein

Authors: Salim, Hiba ^{a, 1}, Pont, Laura ^{a, b, 1}, Giménez, Estela ^a, Poolsup, Suttinee ^c, Berezovski, Maxim V. ^c, Benavente, Fernando ^{a, ⁎}

Source: In Microchemical Journal January 2025 208

Development of DNA aptamers for visualization of glial brain tumors and detection of circulating tumor cells

Authors: Kichkailo, Anna S., Narodov, Andrey A., Komarova, Maria A., Zamay, Tatiana N., Zamay, Galina S., Kolovskaya, Olga S., Erakhtin, Evgeniy E., Glazyrin, Yury E., Veprintsev, Dmitry V., Moryachkov, Roman V., Zabluda, Vladimir V., Shchugoreva, Irina, Artyushenko, Polina, Mironov, Vladimir A., Morozov, Dmitry I., Khorzhevskii, Vladimir A., Gorbushin, Anton V., Koshmanova, Anastasia A., Nikolaeva, Elena D., Grinev, Igor P., Voronkovskii, Ivan I., Grek, Daniil S., Belugin, Kirill V., Volzhentsev, Alexander A., Badmaev, Oleg N., Luzan, Natalia A., Lukyanenko, Kirill A., Peters, Georgy, Lapin, Ivan N., Kirichenko, Andrey K., Konarev, Petr V., Morozov, Evgeny V., Mironov, Gleb G., Gargaun, Ana, Muharemagic, Darija, Zamay, Sergey S., Kochkina, Elena V., Dymova, Maya A., Smolyarova, Tatiana E., Sokolov, Alexey E., Modestov, Andrey A., Tokarev, Nikolay A., Shepelevich, Nikolay V., Ozerskaya, Anastasia V., Chanchikova, Natalia G., Krat, Alexey V., Zukov, Ruslan A., Bakhtina, Varvara I., Shnyakin, Pavel G., Shesternya, Pavel A., Svetlichnyi, Valery A., Petrova, Marina M., Artyukhov, Ivan P., Tomilin, Felix N., Berezovski, Maxim V.

Source: Molecular therapy.Nucleic acids. 32:267-288

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100192235045.0x000001&indx=1&recIds=ETOCvdc_100192235045.0x000001

Discovery of DNA aptamers targeting SARS-CoV-2 nucleocapsid protein and protein-binding epitopes for label-free COVID-19 diagnostics

Authors: Poolsup, Suttinee, Zaripov, Emil, Hüttmann, Nico, Minic, Zoran, Artyushenko, Polina V., Shchugoreva, Irina A., Tomilin, Felix N., Kichkailo, Anna S., Berezovski, Maxim V.

Source: Molecular therapy.Nucleic acids. 31:731-743

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185432484.0x000001&indx=1&recIds=ETOCvdc_100185432484.0x000001

A comprehensive proteomics analysis of the response of Pseudomonas aeruginosa to nanoceria cytotoxicity

Authors: Izrael Živković, Lidija, Hüttmann, Nico, Susevski, Vanessa, Medić, Ana, Beškoski, Vladimir, Berezovski, Maxim V., Minić, Zoran, Živković, Ljiljana, Karadžić, Ivanka

Source: Nanotoxicology. 17(1):20-41

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100179041595.0x000001&indx=1&recIds=ETOCvdc_100179041595.0x000001

Nucleic Acid Aptamers Increase the Anticancer Efficiency and Reduce the Toxicity of Cisplatin-Arabinogalactan Conjugates In Vivo

Authors: Zamay, Tatiana N., Starkov, Alexander K., Kolovskaya, Olga S., Zamay, Galina S., Veprintsev, Dmitry V., Luzan, Natalia, Nikolaeva, Elena D., Lukyanenko, Kirill A., Artyushenko, Polina V., Shchugoreva, Irina A., Glazyrin, Yury E., Koshmanova, Anastasia A., Krat, Alexey V., Tereshina, Dariya S., Zamay, Sergey S., Pats, Yuriy S., Zukov, Ruslan A., Tomilin, Felix N., Berezovski, Maxim V., Kichkailo, Anna S.

Source: Nucleic acid therapeutics. 32(6):497-506

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167392052.0x000001&indx=1&recIds=ETOCvdc_100167392052.0x000001

The role of SAXS and molecular simulations in 3D structure elucidation of a DNA aptamer against lung cancer

Authors: Morozov, Dmitry, Mironov, Vladimir, Moryachkov, Roman V., Shchugoreva, Irina A., Artyushenko, Polina V., Zamay, Galina S., Kolovskaya, Olga S., Zamay, Tatiana N., Krat, Alexey V., Molodenskiy, Dmitry S., Zabluda, Vladimir N., Veprintsev, Dmitry V., Sokolov, Alexey E., Zukov, Ruslan A., Berezovski, Maxim V., Tomilin, Felix N., Fedorov, Dmitri G., Alexeev, Yuri, Kichkailo, Anna S.

Source: In Molecular Therapy - Nucleic Acids 3 September 2021 25:316-327

Comprehensive Characterization of Raw and Processed Quinoa from Conventional and Organic Farming by Label-Free Shotgun Proteomics.

Authors: Galindo-Luján, Rocío, Pont, Laura, Minic, Zoran, Berezovski, Maxim V., Quispe, Fredy, Sanz-Nebot, Victoria, Benavente, Fernando

Source: Journal of Agricultural & Food Chemistry; 1/29/2025, Vol. 73 Issue 4, p2669-2677, 9p

Systemic Mechanisms of Ionic Regulation in Carcinogenesis.

Authors: Zamay, Tatiana N., Zamay, Sergey S., Zamay, Galina S., Kolovskaya, Olga S., Kichkailo, Anna S., Berezovski, Maxim V.

Source: Cancers; Jan2025, Vol. 17 Issue 2, p286, 19p

Subject Terms: HOMEOSTASIS, POTASSIUM, TUMOR markers, CELL motility, CALCIUM, SODIUM, TUMORS, MEMBRANE proteins, DISEASE progression

11C-radiolabeled aptamer for imaging of tumors and metastases using positron emission tomography- computed tomography

Authors: Ozerskaya, Anastasia V., Zamay, Tatiana N., Kolovskaya, Olga S., Tokarev, Nikolay A., Belugin, Kirill V., Chanchikova, Natalia G., Badmaev, Oleg N., Zamay, Galina S., Shchugoreva, Irina A., Moryachkov, Roman V., Zabluda, Vladimir N., Khorzhevskii, Vladimir A., Shepelevich, Nikolay, Gappoev, Stanislav V., Karlova, Elena A., Saveleva, Anastasia S., Volzhentsev, Alexander A., Blagodatova, Anna N., Lukyanenko, Kirill A., Veprintsev, Dmitry V., Smolyarova, Tatyana E., Tomilin, Felix N., Zamay, Sergey S., Silnikov, Vladimir N., Berezovski, Maxim V., Kichkailo, Anna S.

Source: Molecular therapy.Nucleic acids. 26:1159-1172

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100178801525.0x000001&indx=1&recIds=ETOCvdc_100178801525.0x000001

Aptamer's Structure Optimization for Better Diagnosis and Treatment of Glial Tumors.

Authors: Koshmanova, Anastasia A., Artyushenko, Polina V., Shchugoreva, Irina A., Fedotovskaya, Victoriya D., Luzan, Natalia A., Kolovskaya, Olga S., Zamay, Galina S., Lukyanenko, Kirill A., Veprintsev, Dmitriy V., Khilazheva, Elena D., Zamay, Tatiana N., Ivanova, Daria A., Kastyuk, Maria R., Lapin, Ivan N., Svetlichnyi, Valery A., Tomilin, Felix N., Shved, Nikita A., Gulaia, Valeriia S., Kumeiko, Vadim V., Berezovski, Maxim V.

Source: Cancers; Dec2024, Vol. 16 Issue 23, p4111, 17p

Subject Terms: DNA analysis, OLIGONUCLEOTIDE arrays, IN vitro studies, FLOW cytometry, GLIOMAS, RESEARCH funding, ANISOTROPY, CELL lines, MOLECULAR models, MOLECULAR structure, ENDOTHELIAL cells, MOLECULAR biology, MICROSCOPY, FLUORIMETRY, DNA-binding proteins

Targeting Ephrin Receptor Tyrosine Kinase A2 with a Selective Aptamer for Glioblastoma Stem Cells

Authors: Affinito, Alessandra, Quintavalle, Cristina, Esposito, Carla Lucia, Roscigno, Giuseppina, Giordano, Catello, Nuzzo, Silvia, Ricci-Vitiani, Lucia, Scognamiglio, Iolanda, Minic, Zoran, Pallini, Roberto, Berezovski, Maxim V., de Francisis, Vittorio, Condorelli, Gerolama

Source: In Molecular Therapy - Nucleic Acids 5 June 2020 20:176-185

Nucleic Acid Aptamers for Molecular Therapy of Epilepsy and Blood-Brain Barrier Damages

Authors: Zamay, Tatiana N., Zamay, Galina S., Shnayder, Natalia A., Dmitrenko, Diana V., Zamay, Sergey S., Yushchenko, Victoria, Kolovskaya, Olga S., Susevski, Vanessa, Berezovski, Maxim V., Kichkailo, Anna S.

Source: In Molecular Therapy - Nucleic Acids 6 March 2020 19:157-167

Three-Way Electrochemical Sensing of Ultra-Low MicroRNA Levels

Authors: Labib, Mahmoud, Khan, Nasrin, Cheng, Jenny, Pezacki, John Paul, Berezovski, Maxim V.

Subject Terms: Quantitative Biology - Biomolecules, Physics - Biological Physics, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1208.3782

Aptamer-based Impedimetric Sensor for Bacterial Typing

Authors: Labib, Mahmoud, Zamay, Anna S., Kolovskaya, Olga S., Reshetneva, Irina T., Zamay, Galina S., Kibbee, Richard J., Sattar, Syed A., Zamay, Tatiana N., Berezovski, Maxim V.

Source: Analytical Chemistry 2012 84 (19), 8114-8117

Subject Terms: Quantitative Biology - Biomolecules, Physics - Biological Physics, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1208.0613

On-line Aptamer Affinity Solid-Phase Extraction Capillary Electrophoresis-Mass Spectrometry for the Analysis of Blood α-Synuclein

Authors: Pero-Gascon, Roger, Benavente, Fernando, Minic, Zoran, Berezovski, Maxim V., Sanz-Nebot, Victoria

Source: Analytical chemistry. 92(1):1525-1533

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN622801217&indx=1&recIds=ETOCRN622801217

Molecular Epitope Determination of Aptamer Complexes of the Multidomain Protein C‐Met by Proteolytic Affinity‐Mass Spectrometry

Authors: Lupu, Loredana, Wiegand, Pascal, Hüttmann, Nico, Rawer, Stephan, Kleinekofort, Wolfgang, Shugureva, Irina, Kichkailo, Anna S., Tomilin, Felix N., Lazarev, Alexander, Berezovski, Maxim V., Przybylski, Michael

Source: ChemMedChem. 15(4):363-369

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100103002124.0x000001&indx=1&recIds=ETOCvdc_100103002124.0x000001

Four steps for revealing and adjusting the 3D structure of aptamers in solution by small-angle X-ray scattering and computer simulation

Authors: Tomilin, Felix N., Moryachkov, Roman, Shchugoreva, Irina, Zabluda, Vladimir N., Peters, Georgy, Platunov, Mikhail, Spiridonova, Vera, Melnichuk, Anastasia, Atrokhova, Anastasia, Zamay, Sergey S., Ovchinnikov, Sergey G., Zamay, Galina S., Sokolov, Alexey, Zamay, Tatiana N., Berezovski, Maxim V., Kichkailo, Anna S.

Source: Analytical and bioanalytical chemistry. 411(25):6723-6732

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125582377.0x000001&indx=1&recIds=ETOCvdc_100125582377.0x000001

Visualization of Brain Tumors with Infrared-Labeled Aptamers for Fluorescence-Guided Surgery

Authors: Zamay, Galina, Koshmanova, Anastasia, Narodov, Andrey, Gorbushin, Anton, Voronkovskii, Ivan, Grek, Daniil, Luzan, Natalia, Kolovskaya, Olga, Shchugoreva, Irina, Artyushenko, Polina, Glazyrin, Yury, Fedotovskaya, Victoriya, Kuziakova, Olga, Veprintsev, Dmitry, Belugin, Kirill, Lukyanenko, Kirill, Nikolaeva, Elena, Kirichenko, Andrey, Lapin, Ivan, Khorzhevskii, Vladimir, Semichev, Evgeniy, Mohov, Alexey, Kirichenko, Daria, Tokarev, Nikolay, Chanchikova, Natalia, Krat, Alexey, Zukov, Ruslan, Bakhtina, Varvara, Shnyakin, Pavel, Shesternya, Pavel, Tomilin, Felix, Kosinova, Aleksandra, Svetlichnyi, Valery, Zamay, Tatiana, Kumeiko, Vadim, Mezko, Vasily, Berezovski, Maxim V., Kichkailo, Anna

Source: Journal of the American Chemical Society; September 2024, Vol. 146 Issue: 36 p24989-25004, 16p

Aptamer-Targeted Plasmonic Photothermal Therapy of Cancer

Authors: Kolovskaya, Olga S., Zamay, Tatiana N., Belyanina, Irina V., Karlova, Elena, Garanzha, Irina, Aleksandrovsky, Aleksandr S., Kirichenko, Andrey, Dubynina, Anna V., Sokolov, Alexey E., Zamay, Galina S., Glazyrin, Yury E., Zamay, Sergey, Ivanchenko, Tatiana, Chanchikova, Natalia, Tokarev, Nikolay, Shepelevich, Nikolay, Ozerskaya, Anastasia, Badrin, Evgeniy, Belugin, Kirill, Belkin, Simon, Zabluda, Vladimir, Gargaun, Ana, Berezovski, Maxim V., Kichkailo, Anna S.

Source: In Molecular Therapy - Nucleic Acids 15 December 2017 9:12-21

Comparative Proteomic Profiling of Blood Plasma Revealed Marker Proteins Involved in Temporal Lobe Epilepsy.

Authors: Glazyrin, Yury E., Veprintsev, Dmitry V., Timechko, Elena E., Minic, Zoran, Zamay, Tatiana N., Dmitrenko, Diana V., Berezovski, Maxim V., Kichkailo, Anna S.

Source: International Journal of Molecular Sciences; Jul2024, Vol. 25 Issue 14, p7935, 15p

Subject Terms: TEMPORAL lobe epilepsy, BLOOD plasma, PROTEOMICS, MAGNETIC resonance imaging, COMPLEMENT (Immunology), PROTEINS