Europe as a secondary distribution hub in the worldwide invasion of the potato cyst nematode Globodera rostochiensis

Authors: Magali Esquibet, James M. Mwangi, Sebastian Kiewnick, Xiaohong Wang, Benjamin Mimee, Nurul Dwi Handayani, Wim Bert, Johannes Helder, John Wainer, Itaru Sakata, Nathan Garcia, Eric Grenier, Josselin Montarry

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-11 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/17e256d96ee74103952d429fce4c6257

Characterization of microRNAs in the cyst nematode Heterodera glycines identifies possible candidates involved in cross-kingdom interactions with its host Glycine max

Authors: Dave T. Ste-Croix, Richard R. Bélanger, Benjamin Mimee

Source: RNA Biology, Vol 20, Iss 1, Pp 614-628 (2023)

Subject Terms: mirna, heterodera glycines, plant-parasitic nematode, scn, cross-kingdom interaction, effectors, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1547-6286; https://doaj.org/toc/1555-8584

Access URL: https://doaj.org/article/08a45c9045524ec299e2405213937318

Neonicotinoid Seed Treatments Influence Soil Nematode Taxonomic Composition and the Soil Microbial Cooccurrence Networks

Authors: Mona Parizadeh, Steven W. Kembel, Benjamin Mimee

Source: Phytobiomes Journal, Vol 7, Iss 4, Pp 478-490 (2023)

Subject Terms: cooccurrence relationships, free-living nematode, neonicotinoids, network analysis, soil food web, trophic groups, Plant culture, SB1-1110, Microbial ecology, QR100-130, Plant ecology, QK900-989

File Description: electronic resource

Relation: https://doaj.org/toc/2471-2906

Access URL: https://doaj.org/article/bbf17764ab404bdc9e2ee97e7befbe18

A Genome Resource for 192 Verticillium dahliae Isolates Infecting Potatoes Across Canada

Authors: Tanya Arseneault, Joël Lafond-Lapalme, Chary Esteban Quinche Gonzalez, Katerina S. Jordan, Dmytro Yevtushenko, Ryan Barrett, Hervé Van der Heyden, Dahu Chen, Mario Tenuta, Benjamin Mimee

Source: PhytoFrontiers, Vol 3, Iss 3, Pp 753-757 (2023)

Subject Terms: minimum spanning network, phylogeny, population genomics, variant calling, Verticillium dahliae, whole-genome sequencing, Plant culture, SB1-1110, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/2690-5442

Access URL: https://doaj.org/article/fb02b46ab0604af0946356955bcd5dd5

Species-specific microRNA discovery and target prediction in the soybean cyst nematode

Authors: Victoria Ajila, Laura Colley, Dave T. Ste-Croix, Nour Nissan, Elroy R. Cober, Benjamin Mimee, Bahram Samanfar, James R. Green

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-17 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/d0e3f3fd0dbc4ebba5b39504763eb195

An integrated data-driven approach to monitor and estimate plant-scale growth using UAV

Authors: Philippe Vigneault, Joël Lafond-Lapalme, Arianne Deshaies, Kosal Khun, Samuel de la Sablonnière, Martin Filion, Louis Longchamps, Benjamin Mimee

Source: ISPRS Open Journal of Photogrammetry and Remote Sensing, Vol 11, Iss , Pp 100052- (2024)

Subject Terms: UAV, Crop monitoring, Plant scale growth model, Logistic growth curve, Growth characteristics, Maturity estimation, Geography (General), G1-922, Surveying, TA501-625

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667393223000236; https://doaj.org/toc/2667-3932

Access URL: https://doaj.org/article/05d6a09e48c84d7f8304a1e005d29fc4

Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Authors: Rick Masonbrink, Tom R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat S. Juvale, Jeremy Schmutz, Nathan T. Johnson, Dmitry Korkin, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-van den Akker, Matthew Hudson, Andrew J. Severin, Thomas J. Baum

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-1 (2024)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/7a853e5f1af543528b92fba7bc5cb2e4

P-TarPmiR accurately predicts plant-specific miRNA targets

Authors: Victoria Ajila, Laura Colley, Dave T. Ste-Croix, Nour Nissan, Ashkan Golshani, Elroy R. Cober, Benjamin Mimee, Bahram Samanfar, James R. Green

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-10 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/faf9abc5687c4d9390a124bccf8958bd

Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode

Authors: Nour Nissan, Julia Hooker, Eric Arezza, Kevin Dick, Ashkan Golshani, Benjamin Mimee, Elroy Cober, James Green, Bahram Samanfar

Source: Frontiers in Bioinformatics, Vol 3 (2023)

Subject Terms: soybean cyst nematode, computational biology, protein–protein interactions, bioinformatics, SCN resistance, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fbinf.2023.1199675/full; https://doaj.org/toc/2673-7647

Access URL: https://doaj.org/article/3401be6ce91f4c9ebf41d70072644779

Population genetic structure of the carrot weevil (Listronotus oregonensis) in North America

Authors: Marianne Bessette, Dave T. Ste‐Croix, Jacques Brodeur, Benjamin Mimee, Annie‐Ève Gagnon

Source: Evolutionary Applications, Vol 15, Iss 2, Pp 300-315 (2022)

Subject Terms: apiaceous host plants, carrot weevil, genetic structure, genotyping‐by‐sequencing, geographic distance, mtDNA COI, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/08c0e3dba0834f069585403bdc86776a

The SoyaGen Project: Putting Genomics to Work for Soybean Breeders

Authors: François Belzile, Martine Jean, Davoud Torkamaneh, Aurélie Tardivel, Marc-André Lemay, Chiheb Boudhrioua, Geneviève Arsenault-Labrecque, Chloe Dussault-Benoit, Amandine Lebreton, Maxime de Ronne, Vanessa Tremblay, Caroline Labbé, Louise O’Donoughue, Vincent-Thomas Boucher St-Amour, Tanya Copley, Eric Fortier, Dave T. Ste-Croix, Benjamin Mimee, Elroy Cober, Istvan Rajcan, Tom Warkentin, Éric Gagnon, Sylvain Legay, Jérôme Auclair, Richard Bélanger

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: translational genomics, genetic diversity, marker-trait associations, haplotypes, genomic prediction, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.887553/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/b9d18de10f534463a536f9eaf3681d7b

What determines host specificity in hyperspecialized plant parasitic nematodes?

Authors: Michael Sabeh, Etienne Lord, Éric Grenier, Marc St-Arnaud, Benjamin Mimee

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-13 (2019)

Subject Terms: Plant-parasitic nematode, Globodera, Transcriptomic study, RNA-seq, Pathogenicity, Effectors, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-019-5853-4; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/86821b8eeba24688b0873dc8d7fa95a1

Neonicotinoid Seed Treatments Have Significant Non-target Effects on Phyllosphere and Soil Bacterial Communities

Authors: Mona Parizadeh, Benjamin Mimee, Steven W. Kembel

Source: Frontiers in Microbiology, Vol 11 (2021)

Subject Terms: bacterial community structure, bacterial diversity, host-microbe interactions, neonicotinoid seed treatment, pesticide non-target effects, phyllosphere, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2020.619827/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/843a75b0d41049de9c2ad03d215aa904

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Authors: Rick Masonbrink, Tom R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat S. Juvale, Jeremy Schmutz, Nathan T. Johnson, Dmitry Korkin, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-van den Akker, Matthew Hudson, Andrew J. Severin, Thomas J. Baum

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-14 (2019)

Subject Terms: Heterodera glycines, SCN, Soybean cyst nematode, Genome, Tandem duplication, Effector, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-019-5485-8; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/77bd9e4783af4f7faf9b53c2791b5bbe

A Broad Review of Soybean Research on the Ongoing Race to Overcome Soybean Cyst Nematode

Authors: Nour Nissan, Benjamin Mimee, Elroy R. Cober, Ashkan Golshani, Myron Smith, Bahram Samanfar

Source: Biology, Vol 11, Iss 2, p 211 (2022)

Subject Terms: soybean, soybean cyst nematode (SCN), disease control, pathogen management, omics, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2079-7737/11/2/211; https://doaj.org/toc/2079-7737

Access URL: https://doaj.org/article/e33614f73c774d3c9d4f6e5cd6cee976

Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida

Authors: Marc-Olivier Duceppe, Joël Lafond-Lapalme, Juan Emilio Palomares-Rius, Michaël Sabeh, Vivian Blok, Peter Moffett, Benjamin Mimee

Source: Scientific Reports, Vol 7, Iss 1, Pp 1-13 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/85f84cd9ccd74e6f91e3c4bae4b9da9c

Prevalence of the root lesion nematode virus (RLNV1) in populations of Pratylenchus penetrans from North America

Authors: Paulo Vieira, Amy Peetz, Benjamin Mimee, Kanan Saikai, Dimitre Mollov, Ann MacGuidwin, Inga Zasada, Lev G. Nemchinov

Source: Journal of Nematology, Vol 52, Iss i_current (2020)

Subject Terms: Distribution, Picorna-like virus, Pratylenchidae, Variability, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.exeley.com/exeley/journals/journal_of_nematology/52/i_current/pdf/10.21307_jofnem-2020-045.pdf; https://doaj.org/toc/0022-300X; https://doaj.org/toc/2640-396X

Access URL: https://doaj.org/article/8b26673168684b4aac3ea17500aaf67d

Genome Scans Reveal Homogenization and Local Adaptations in Populations of the Soybean Cyst Nematode

Authors: Anne-Frédérique Gendron St-Marseille, Etienne Lord, Pierre-Yves Véronneau, Jacques Brodeur, Benjamin Mimee

Source: Frontiers in Plant Science, Vol 9 (2018)

Subject Terms: Bayesian outlier detection, genetic diversity, genotyping-by-sequencing, Heterodera glycines, isolation by distance, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2018.00987/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/75e84727d843485c88c5c1de74087d00

Transcriptome-wide selection of a reliable set of reference genes for gene expression studies in potato cyst nematodes (Globodera spp.).

Authors: Michael Sabeh, Marc-Olivier Duceppe, Marc St-Arnaud, Benjamin Mimee

Source: PLoS ONE, Vol 13, Iss 3, p e0193840 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5834164?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/217322320ed54eb0993bedca394c93bf