Recovery of mitogenomes from whole genome sequences to infer maternal diversity in 1883 modern taurine and indicine cattle

Authors: Jigme Dorji, Christy J. Vander Jagt, Amanda J. Chamberlain, Benjamin G. Cocks, Iona M. MacLeod, Hans D. Daetwyler

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-18 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/4b6d0718042b4e3ab9f643130b1255df

Functionally prioritised whole-genome sequence variants improve the accuracy of genomic prediction for heat tolerance

Authors: Evans K. Cheruiyot, Mekonnen Haile-Mariam, Benjamin G. Cocks, Iona M. MacLeod, Raphael Mrode, Jennie E. Pryce

Source: Genetics Selection Evolution, Vol 54, Iss 1, Pp 1-18 (2022)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/01b43b530611454bb9c1271bfbfba465

New loci and neuronal pathways for resilience to heat stress in cattle

Authors: Evans K. Cheruiyot, Mekonnen Haile-Mariam, Benjamin G. Cocks, Iona M. MacLeod, Ruidong Xiang, Jennie E. Pryce

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-16 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/36bc76d06a1140c7a17e3b0c2e32f15a

Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle

Authors: Jigme Dorji, Christy J. Vander Jagt, Josie B. Garner, Leah C. Marett, Brett A. Mason, Coralie M. Reich, Ruidong Xiang, Emily L. Clark, Benjamin G. Cocks, Amanda J. Chamberlain, Iona M. MacLeod, Hans D. Daetwyler

Source: BMC Genomics, Vol 21, Iss 1, Pp 1-17 (2020)

Subject Terms: Mitochondria, Energy metabolism, Differential gene expression, Gene co-expression, Cattle, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-020-07018-7; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/f3382308da344f6097febf5740eba6c1

Improving Genomic Selection for Heat Tolerance in Dairy Cattle: Current Opportunities and Future Directions

Authors: Evans K. Cheruiyot, Mekonnen Haile-Mariam, Benjamin G. Cocks, Jennie E. Pryce

Source: Frontiers in Genetics, Vol 13 (2022)

Subject Terms: heat tolerance, dairy, Australia, genomic selection, snps, prediction accuracy, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.894067/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/ad544e2599e0492095f31ea73f053280

Correction to: Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle

Authors: Jigme Dorji, Christy J. Vander Jagt, Josie B. Garner, Leah C. Marett, Brett A. Mason, Coralie M. Reich, Ruidong Xiang, Emily L. Clark, Benjamin G. Cocks, Amanda J. Chamberlain, Iona M. MacLeod, Hans D. Daetwyler

Source: BMC Genomics, Vol 23, Iss 1, Pp 1-2 (2022)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/14480e88b0814aa68010b4048160b057

De Novo Long-Read Whole-Genome Assemblies and the Comparative Pan-Genome Analysis of Ascochyta Blight Pathogens Affecting Field Pea

Authors: Yvonne O. Ogaji, Robert C. Lee, Tim I. Sawbridge, Benjamin G. Cocks, Hans D. Daetwyler, Sukhjiwan Kaur

Source: Journal of Fungi, Vol 8, Iss 8, p 884 (2022)

Subject Terms: nuclear genome, mitochondrial genome, CAZymes, orthologs, comparative genomics, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2309-608X/8/8/884; https://doaj.org/toc/2309-608X

Access URL: https://doaj.org/article/c794516026bf44b9b8bf8df54c3cb99c

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits

Authors: Min Wang, Timothy P. Hancock, Amanda J. Chamberlain, Christy J. Vander Jagt, Jennie E. Pryce, Benjamin G. Cocks, Mike E. Goddard, Benjamin J. Hayes

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-17 (2018)

Subject Terms: Topological association domains, CTCF binding motifs, Allelic-specific expression, Allele-specific expression quantitative trail loci, Expression quantitative trail loci, Functional annotation, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-4800-0; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/968165e3ff854e728b4ad6f906c3d391

Horizontal transfer of a ß-1,6-glucanase gene from an ancestral species of fungal endophyte to a cool-season grass host

Authors: Hiroshi Shinozuka, Inoka K. Hettiarachchige, Maiko Shinozuka, Noel O. I. Cogan, German C. Spangenberg, Benjamin G. Cocks, John W. Forster, Timothy I. Sawbridge

Source: Scientific Reports, Vol 7, Iss 1, Pp 1-11 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/3df00967f872442e87278f16f28a882b

Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits

Authors: Min Wang, Timothy P. Hancock, Iona M. MacLeod, Jennie E. Pryce, Benjamin G. Cocks, Benjamin J. Hayes

Source: Genetics Selection Evolution, Vol 49, Iss 1, Pp 1-16 (2017)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12711-017-0331-4; https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/403dd0385b7f48a5abe14113689ac0a7

Milk bottom-up proteomics: method optimisation.

Authors: Delphine eVincent, Vilnis eEzernieks, Aaron eElkins, Nga eNguyen, Peter J. Moate, Benjamin G. Cocks, Simone eRochfort

Source: Frontiers in Genetics, Vol 6 (2016)

Subject Terms: Proteome, Replicates, trypsin digestion., shotgun nLC-ESI-MS, Jersey and Holstein-Friesian cow milk, Genetics, QH426-470

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fgene.2015.00360/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/10456911ca904021b56e74fb874b1800

Global Survey of the Bovine Salivary Proteome: Integrating Multidimensional Prefractionation, Targeted, and Glycocapture Strategies.

Authors: Ching-Seng Ang, Steve Binos, Matthew I Knight, Peter J Moate, Benjamin G Cocks, Matthew B McDonagh

Source: Journal of Proteome Research; Nov2011, Vol. 10 Issue 11, p5059-5069, 11p

Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows.

Authors: Keith W Savin, Peter J Moate, S R O Williams, Carolyn Bath, Joanne Hemsworth, Jianghui Wang, Doris Ram, Jody Zawadzki, Simone Rochfort, Benjamin G Cocks

Source: PLoS ONE, Vol 17, Iss 5, p e0268157 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f63721d25ad342cdb8e79600f845a3d7

Faecalibacterium diversity in dairy cow milk.

Authors: Keith W Savin, Jody Zawadzki, Martin J Auldist, Jianghui Wang, Doris Ram, Simone Rochfort, Benjamin G Cocks

Source: PLoS ONE, Vol 14, Iss 8, p e0221055 (2019)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/03a689d5f7994d9a957b7aa31f574e2f

Ancient antimicrobial peptides kill antibiotic-resistant pathogens: Australian mammals provide new options.

Authors: Jianghui Wang, Emily S W Wong, Jane C Whitley, Jian Li, Jessica M Stringer, Kirsty R Short, Marilyn B Renfree, Katherine Belov, Benjamin G Cocks

Source: PLoS ONE, Vol 6, Iss 8, p e24030 (2011)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21912615/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/90b3d9d3ed5d43d6b05f4b455c0515a6