Comparison of nucleic acid amplification based white spot syndrome virus (WSSV) detection methods in Penaeus vannamei

Authors: Yang, Jinyu ^{a, b, 1}, Zhang, Lu ^{a, b, 1}, Bao, Lisui ^{a, c}, Wang, Mengqiang ^{a, b, d, ⁎}

Source: In Aquaculture 15 March 2025 598

Cryopreservation of Yesso scallop (Patinopecten yessoensis) sperm

Authors: Wang, Yangrui, Wang, Yujue, Bao, Lisui, Sun, Cheng, Huang, Shanhuan, Li, Xiaoxu, Hu, Xiaoli, Liu, Yibing

Source: In Aquaculture Reports June 2024 36

Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot

Authors: Dai, Xiaoting, Zhu, Xuan, Bao, Lisui, Chen, Xiaomei, Miao, Yan, Li, Yangping, Li, Yuli, Lv, Jia, Zhang, Lingling, Huang, Xiaoting, Bao, Zhenmin, Wang, Shi, Wang, Jing

Source: Computational and Structural Biotechnology Journal. 20:2713-2722

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190063160.0x000001&indx=1&recIds=ETOCvdc_100190063160.0x000001

Transcriptome Analysis Reveals the lncRNA-mRNA Co-expression Network Regulating the Aestivation of Sea Cucumber.

Authors: Chen, Xiaomei, Han, Wentao, Yang, Rui, Zhu, Xuan, Li, Shengwen, Wang, Yangfan, Sun, Xue, Li, Yuli, Bao, Lisui, Zhang, Lingling, Wang, Shi, Wang, Jing

Source: Marine Biotechnology; Feb2025, Vol. 27 Issue 1, p1-14, 14p

MolluscDB 2.0: a comprehensive functional and evolutionary genomics database for over 1400 molluscan species.

Authors: Liu, Fuyun, Cai, Bingcheng, Lian, Shanshan, Chang, Xinyao, Chen, Dongsheng, Pu, Zhongqi, Bao, Lisui, Wang, Jing, Lv, Jia, Zheng, Hongkun, Bao, Zhenmin, Zhang, Lingling, Wang, Shi, Li, Yuli

Source: Nucleic Acids Research; 1/6/2025, Vol. 53 Issue D1, pD1075-D1086, 12p

Genomic differentiation and selection signatures of two elite varieties of Yesso scallop Mizuhopecten yessoensis

Authors: Lv, Jia, Cai, Yantong, Liu, Pingping, Huang, Xiaowen, Lv, Zhenli, Zhang, Rongchao, Zhao, Liang, Bao, Lisui, Wang, Shi, Hu, Jingjie

Source: In Aquaculture 15 March 2022 550

The Effects of Larval Cryopreservation on the Epigenetics of the Pacific Oyster Crassostrea gigas.

Authors: Liu, Yibing¹ (AUTHOR) liuyibing@ouc.edu.cn, Bao, Lisui² (AUTHOR) baolisui@ouc.edu.cn, Catalano, Sarah R.³ (AUTHOR) sarah.catalano@sa.gov.au, Zhu, Xiaochen⁴ (AUTHOR) asawinter2003@hotmail.com, Li, Xiaoxu³ (AUTHOR) xiaoxu.li@sa.gov.au

Source: International Journal of Molecular Sciences. Dec2023, Vol. 24 Issue 24, p17262. 15p.

Subject Terms: *LARVAE, *CRASSOSTREA, *PACIFIC oysters, *EPIGENETICS, *GENE expression, *REGULATOR genes, *GENETIC techniques, *DNA methylation

Genetic differentiation and selection signatures in two bay scallop (Argopecten irradians) breeds revealed by whole-genome resequencing analysis

Authors: Wang, Hao, Lv, Jia, Zeng, Qifan, Liu, Yaran, Xing, Qiang, Wang, Shi, Hu, Jingjie, Bao, Lisui

Source: In Aquaculture 15 October 2021 543

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Authors: Arora, Kanika, Shah, Minita, Shelton, Jennifer, Bowlby, Reanne, Friedl, Verena, Goldman, Mary, Craft, Brian, Heiman, David I., Hajirasouliha, Iman, Ricketts, Camir, Anur, Pavana, Chiotti, Kami E., Caesar-Johnson, Samantha J., Demchok, John A., Ferguson, Martin L., Kemal, Anab, Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Spellman, Paul T., Raphael, Benjamin, Akbani, Rehan, Zhu, Jingchun, Jones, Steven J.M., Shen, Hui, Carrot-Zhang, Jian, Yao, Xiaotong, Devarakonda, Siddhartha, Deshpande, Aditya, Damrauer, Jeffrey S., Silva, Tiago Chedraoui, Wong, Christopher K., Choi, Hyo Young, Felau, Ina, Robertson, A. Gordon, Castro, Mauro A.A., Bao, Lisui, Rheinbay, Esther, Liu, Eric Minwei, Trieu, Tuan, Haan, David, Yau, Christina, Hinoue, Toshinori, Liu, Yuexin, Shapira, Ofer, Kumar, Kiran, Mungall, Karen L., Zhang, Hailei, Lee, Jake June-Koo, Berger, Ashton, Gao, Galen F., Zhitomirsky, Binyamin, Liang, Wen-Wei, Zhou, Meng, Moorthi, Sitapriya, Berger, Alice H., Collisson, Eric A., Zody, Michael C., Ding, Li, Cherniack, Andrew D., Getz, Gad, Elemento, Olivier, Benz, Christopher C., Stuart, Josh, Zenklusen, J.C., Beroukhim, Rameen, Chang, Jason C., Campbell, Joshua D., Hayes, D. Neil, Yang, Lixing, Laird, Peter W., Weinstein, John N., Kwiatkowski, David J., Tsao, Ming S., Travis, William D., Khurana, Ekta, Berman, Benjamin P., Hoadley, Katherine A., Robine, Nicolas, Meyerson, Matthew, Govindan, Ramaswamy, Imielinski, Marcin

Source: In Cell Reports 2 February 2021 34(5)

High-quality reannotation of the king scallop genome reveals no ‘gene-rich’ feature and evolution of toxin resistance

Authors: Zeng, Qifan, Liu, Jing, Wang, Chunde, Wang, Hao, Zhang, Lingling, Hu, Jingjie, Bao, Lisui, Wang, Shi

Source: In Computational and Structural Biotechnology Journal 2021 19:4954-4960

Coenzyme Q10 Improves the Post-Thaw Sperm Quality in Dwarf Surfclam Mulinia lateralis.

Authors: Xu, Zhen, Yang, Zujing, Bao, Lisui, Lu, Bei, Li, Xiaoxu, Zhan, Xin, Huang, Xiaoting, Liu, Yibing

Source: Antioxidants; Sep2024, Vol. 13 Issue 9, p1085, 16p

Subject Terms: UBIQUINONES, REACTIVE oxygen species, MEMBRANE potential, MITOCHONDRIAL membranes, CELL membranes, DIMETHYL sulfoxide

Chemokine C-C motif ligand 33 is a key regulator of teleost fish barbel development

Authors: Zhou, Tao, Li, Ning, Jin, Yulin, Zeng, Qifan, Prabowo, Wendy, Liu, Yang, Tian, Changxu, Bao, Lisui, Liu, Shikai, Yuan, Zihao, Fu, Qiang, Gao, Sen, Gao, Dongya, Dunham, Rex, Shubin, Neil H., Liu, Zhanjiang

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 May . 115(22), E5018-E5027.

Access URL: https://www.jstor.org/stable/26509947

A chromosome‐level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

Authors: He, Yan, Chang, Yue, Bao, Lisui, Yu, Mengjun, Li, Rui, Niu, Jingjing, Fan, Guangyi, Song, Weihao, Seim, Inge, Qin, Yating, Li, Xuemei, Liu, Jinxiang, Kong, Xiangfu, Peng, Meiting, Sun, Minmin, Wang, Mengya, Qu, Jiangbo, Wang, Xuangang, Liu, Xiaobing, Wu, Xiaolong, Zhao, Xi, Wang, Xuliang, Zhang, Yaolei, Guo, Jiao, Liu, Yang, Liu, Kaiqiang, Wang, Yilin, Zhang, He, Liu, Longqi, Wang, Mingyue, Yu, Haiyang, Wang, Xubo, Cheng, Jie, Wang, Zhigang, Xu, Xun, Wang, Jian, Yang, Huanming, Lee, Simon Ming‐Yuen, Liu, Xin, Zhang, Quanqi, Qi, Jie

Source: Molecular ecology resources. 19(5):1309-1321

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100092819942.0x000001&indx=1&recIds=ETOCvdc_100092819942.0x000001

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish

Authors: Bao, Lisui, Tian, Changxu, Liu, Shikai, Zhang, Yu, Elaswad, Ahmed, Yuan, Zihao, Khalil, Karim, Sun, Fanyue, Yang, Yujia, Zhou, Tao, Li, Ning, Tan, Suxu, Zeng, Qifan, Liu, Yang, Li, Yueru, Li, Yun, Gao, Dongya, Dunham, Rex, Davis, Kenneth, Waldbieser, Geoffrey, Liu, Zhanjiang

Source: BMC biology. 17(1):1-16

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185504275.0x000001&indx=1&recIds=ETOCvdc_100185504275.0x000001

DExD/H-box RNA helicase genes are differentially expressed between males and females during the critical period of male sex differentiation in channel catfish

Authors: Tian, Changxu, Tan, Suxu, Bao, Lisui, Zeng, Qifan, Liu, Shikai, Yang, Yujia, Zhong, Xiaoxiao, Liu, Zhanjiang

Source: In Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics June 2017 22:109-119

Pan-evolutionary and regulatory genome architecture delineated by an integrated macro- and microsynteny approach.

Authors: Yu, Hongwei, Li, Yuli, Han, Wentao, Bao, Lisui, Liu, Fuyun, Ma, Yuanting, Pu, Zhongqi, Zeng, Qifan, Zhang, Lingling, Bao, Zhenmin, Wang, Shi

Source: Nature Protocols; Jun2024, Vol. 19 Issue 6, p1623-1678, 56p

Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish

Authors: Tan, Suxu, Wang, Wenwen, Zhong, Xiaoxiao, Tian, Changxu, Niu, Donghong, Bao, Lisui, Zhou, Tao, Jin, Yulin, Yang, Yujia, Yuan, Zihao, Gao, Dongya, Dunham, Rex, Liu, Zhanjiang

Source: Marine biotechnology. 20(6):729-738

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100126235662.0x000001&indx=1&recIds=ETOCvdc_100126235662.0x000001

Genome-wide association analysis of intra-specific QTL associated with the resistance for enteric septicemia of catfish

Authors: Shi, Huitong, Zhou, Tao, Wang, Xiaozhu, Yang, Yujia, Wu, Chenglong, Liu, Shikai, Bao, Lisui, Li, Ning, Yuan, Zihao, Jin, Yulin, Tan, Suxu, Wang, Wenwen, Zhong, Xiaoxiao, Qin, Guyu, Geng, Xin, Gao, Dongya, Dunham, Rex, Liu, Zhanjiang

Source: Molecular genetics and genomics. 293(6):1365-1378

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100119729104.0x000001&indx=1&recIds=ETOCvdc_100119729104.0x000001

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation

Authors: Li, Ning, Bao, Lisui, Zhou, Tao, Yuan, Zihao, Liu, Shikai, Dunham, Rex, Li, Yuanning, Wang, Kun, Xu, Xiaoyan, Jin, Yulin, Zeng, Qifan, Gao, Sen, Fu, Qiang, Liu, Yang, Yang, Yujia, Li, Qi, Meyer, Axel, Gao, Dongya, Liu, Zhanjiang

Source: BMC genomics. 19(1):1-16

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185360044.0x000001&indx=1&recIds=ETOCvdc_100185360044.0x000001

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

Authors: Yuan, Zihao, Liu, Shikai, Zhou, Tao, Tian, Changxu, Bao, Lisui, Dunham, Rex, Liu, Zhanjiang

Source: BMC genomics. 19(1):1-10

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161425009.0x000001&indx=1&recIds=ETOCvdc_100161425009.0x000001