MedGini: Gini index based sustainable health monitoring system using dew computing

Authors: Karmakar, Amiya, Banerjee, Partha Sarathi, De, Debashis, Bandyopadhyay, Sourav, Ghosh, Pritam

Source: In Medicine in Novel Technology and Devices December 2022 16

UDP-glucose pyrophosphorylase 2, a regulator of glycogen synthesis and glycosylation, is critical for pancreatic cancer growth

Authors: Wolfe, Andrew L., Zhou, Qingwen, Toska, Eneda, Galeas, Jacqueline, Ku, Angel A., Koche, Richard P., Bandyopadhyay, Sourav, Scaltriti, Maurizio, Lebrilla, Carlito B., McCormick, Frank, Kim, Sung Eun

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Aug 01. 118(31), 1-7.

Access URL: https://www.jstor.org/stable/27052719

An expanded universe of cancer targets

Authors: Dancik, Vlado, Gill, Shubhroz, Hua, Bruce, Sharifnia, Tanaz, Viswanathan, Vasanthi, Zou, Yilong, Dela Cruz, Filemon, Kung, Andrew, Stockwell, Brent, Boehm, Jesse, Dempster, Josh, Manguso, Robert, Vazquez, Francisca, Cooper, Lee A.D., Du, Yuhong, Ivanov, Andrey, Lonial, Sagar, Moreno, Carlos S., Niu, Qiankun, Owonikoko, Taofeek, Ramalingam, Suresh, Reyna, Matthew, Zhou, Wei, Grandori, Carla, Shmulevich, Ilya, Swisher, Elizabeth, Cai, Jitong, Chan, Issac S., Dunworth, Matthew, Ge, Yuchen, Georgess, Dan, Grasset, Eloïse M., Henriet, Elodie, Knútsdóttir, Hildur, Lerner, Michael G., Padmanaban, Veena, Perrone, Matthew C., Suhail, Yasir, Tsehay, Yohannes, Warrier, Manisha, Morrow, Quin, Nechiporuk, Tamilla, Long, Nicola, Saultz, Jennifer, Kaempf, Andy, Minnier, Jessica, Tognon, Cristina E., Kurtz, Stephen E., Agarwal, Anupriya, Brown, Jordana, Watanabe-Smith, Kevin, Vu, Tania Q., Jacob, Thomas, Yan, Yunqi, Robinson, Bridget, Lind, Evan F., Kosaka, Yoko, Demir, Emek, Estabrook, Joseph, Grzadkowski, Michael, Nikolova, Olga, Chen, Ken, Deneen, Ben, Liang, Han, Bassik, Michael C., Bhattacharya, Asmita, Brennan, Kevin, Curtis, Christina, Gevaert, Olivier, Ji, Hanlee P., Karlsson, Kasper A.J., Karagyozova, Kremena, Lo, Yuan-Hung, Liu, Katherine, Nakano, Michitaka, Sathe, Anuja, Smith, Amber R., Spees, Kaitlyn, Wong, Wing Hing, Yuki, Kanako, Hangauer, Matt, Kaufman, Dan S., Balmain, Allan, Bollam, Saumya R., Chen, Wei-Ching, Fan, QiWen, Kersten, Kelly, Krummel, Matthew, Li, Yun Rose, Menard, Marie, Nasholm, Nicole, Schmidt, Christin, Serwas, Nina K., Yoda, Hiroyuki, Ashworth, Alan, Bandyopadhyay, Sourav, Bivona, Trevor, Eades, Gabriel, Oberlin, Stefan, Tay, Neil, Wang, Yuhao, Weissman, Jonathan, Hahn, William C., Bader, Joel S., Braun, Theodore P., Califano, Andrea, Clemons, Paul A., Druker, Brian J., Ewald, Andrew J., Fu, Haian, Jagu, Subhashini, Kemp, Christopher J., Kim, William, Kuo, Calvin J., McManus, Michael T., B. Mills, Gordon, Mo, Xiulei, Sahni, Nidhi, Schreiber, Stuart L., Talamas, Jessica A., Tamayo, Pablo, Tyner, Jeffrey W., Wagner, Bridget K., Weiss, William A., Gerhard, Daniela S.

Source: In Cell 4 March 2021 184(5):1142-1155

Cutaneous T-Cell Lymphoma PDX Drug Screening Platform Identifies Cooperation between Inhibitions of PI3Kα/δ and HDAC

Authors: Wu, Chi-Heng, Yang, Chen-Yen, Wang, Linlin, Gao, Hua-Xin, Rakhshandehroo, Taha, Afghani, Shervin, Pincus, Laura, Balassanian, Ronald, Rubenstein, James, Gill, Ryan, Bandyopadhyay, Sourav, McCormick, Frank, Moasser, Mark, Ai, Weiyun Z.

Source: In Journal of Investigative Dermatology February 2021 141(2):364-373

Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing

Authors: Maynard, Ashley, McCoach, Caroline E., Rotow, Julia K., Harris, Lincoln, Haderk, Franziska, Kerr, D. Lucas, Yu, Elizabeth A., Schenk, Erin L., Tan, Weilun, Zee, Alexander, Tan, Michelle, Gui, Philippe, Lea, Tasha, Wu, Wei, Urisman, Anatoly, Jones, Kirk, Sit, Rene, Kolli, Pallav K., Seeley, Eric, Gesthalter, Yaron, Le, Daniel D., Yamauchi, Kevin A., Naeger, David M., Bandyopadhyay, Sourav, Shah, Khyati, Cech, Lauren, Thomas, Nicholas J., Gupta, Anshal, Gonzalez, Mayra, Do, Hien, Tan, Lisa, Bacaltos, Bianca, Gomez-Sjoberg, Rafael, Gubens, Matthew, Jahan, Thierry, Kratz, Johannes R., Jablons, David, Neff, Norma, Doebele, Robert C., Weissman, Jonathan, Blakely, Collin M., Darmanis, Spyros, Bivona, Trever G.

Source: In Cell 3 September 2020 182(5):1232-1251

A Quantitative Chemotherapy Genetic Interaction Map Reveals Factors Associated with PARP Inhibitor Resistance

Authors: Hu, Hsien-Ming, Zhao, Xin, Kaushik, Swati, Robillard, Lilliane, Barthelet, Antoine, Lin, Kevin K., Shah, Khyati N., Simmons, Andy D., Raponi, Mitch, Harding, Thomas C., Bandyopadhyay, Sourav

Source: In Cell Reports 17 April 2018 23(3):918-929

The Parkinson's Disease Protein DJ-1 Is Neuroprotective Due to Cysteine-Sulfinic Acid-Driven Mitochondrial Localization

Authors: Canet-Avilés, Rosa M., Wilson, Mark A., Miller, David W., Ahmad, Rili, McLendon, Chris, Bandyopadhyay, Sourav, Baptista, Melisa J., Ringe, Dagmar, Petsko, Gregory A., Cookson, Mark R.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2004 Jun . 101(24), 9103-9108.

Access URL: https://www.jstor.org/stable/3372397

NF-κB-Activating Complex Engaged in Response to EGFR Oncogene Inhibition Drives Tumor Cell Survival and Residual Disease in Lung Cancer

Authors: Blakely, Collin M., Pazarentzos, Evangelos, Olivas, Victor, Asthana, Saurabh, Yan, Jenny Jiacheng, Tan, Irena, Hrustanovic, Gorjan, Chan, Elton, Lin, Luping, Neel, Dana S., Newton, William, Bobb, Kathryn L., Fouts, Timothy R., Meshulam, Jeffrey, Gubens, Matthew A., Jablons, David M., Johnson, Jeffrey R., Bandyopadhyay, Sourav, Krogan, Nevan J., Bivona, Trever G.

Source: In Cell Reports 7 April 2015 11(1):98-110

Oncogene Mimicry as a Mechanism of Primary Resistance to BRAF Inhibitors

Authors: Sos, Martin L., Levin, Rebecca S., Gordan, John D., Oses-Prieto, Juan A., Webber, James T., Salt, Megan, Hann, Byron, Burlingame, Alma L., McCormick, Frank, Bandyopadhyay, Sourav, Shokat, Kevan M.

Source: In Cell Reports 21 August 2014 8(4):1037-1048

An inflamed tumor cell subpopulation promotes chemotherapy resistance in triple negative breast cancer.

Authors: Jacobo Jacobo, Mauricio, Donnella, Hayley J., Sobti, Sushil, Kaushik, Swati, Goga, Andrei, Bandyopadhyay, Sourav

Source: Scientific Reports; 2/15/2024, Vol. 14 Issue 1, p1-15, 15p

Subject Terms: TRIPLE-negative breast cancer, BREAST, NEOADJUVANT chemotherapy

Mapping the molecular determinants of BRAF oncogene dependence in human lung cancer

Authors: Lin, Luping, Asthana, Saurabh, Chan, Elton, Bandyopadhyay, Sourav, Martins, Maria M., Olivas, Victor, Yan, Jenny Jiacheng, Pham, Luu, Wang, Mingxue Michelle, Bollag, Gideon, Solit, David B., Collisson, Eric A., Rudin, Charles M., Taylor, Barry S., Bivona, Trever G.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2014 Feb . 111(7), 2408-2408.

Access URL: https://www.jstor.org/stable/23768900

Rewiring of Genetic Networks in Response to DNA Damage

Authors: Bandyopadhyay, Sourav, Mehta, Monika, Kuo, Dwight, Sung, Min-Kyung, Chuang, Ryan, Jaehnig, Eric J., Bodenmiller, Bernd, Licon, Katherine, Copeland, Wilbert, Shales, Michael, Fiedler, Dorothea, Dutkowski, Janusz, Guénolé, Aude, van Attikum, Haico, Shokat, Kevan M., Kolodner, Richard D., Huh, Won-Ki, Aebersold, Ruedi, Keogh, Michael-Christopher, Krogan, Nevan J., Ideker, Trey

Source: Science, 2010 Dec 01. 330(6009), 1385-1389.

Access URL: https://www.jstor.org/stable/40963983

Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast

Authors: Roguev, Assen, Bandyopadhyay, Sourav, Zofall, Martin, Zhang, Ke, Fischer, Tamas, Collins, Sean R., Qu, Hongjing, Shales, Michael, Park, Han-Oh, Hayles, Jacqueline, Hoe, Kwang-Lae, Kim, Dong-Uk, Ideker, Trey, Grewal, Shiv I., Weissman, Jonathan S., Krogan, Nevan J.

Source: Science, 2008 Oct . 322(5900), 405-410.

Access URL: https://www.jstor.org/stable/20145055

Computational drug repositioning for the identification of new agents to sensitize drug-resistant breast tumors across treatments and receptor subtypes.

Authors: Yu, Katharine, Basu, Amrita, Yau, Christina, Wolf, Denise M., Goodarzi, Hani, Bandyopadhyay, Sourav, Korkola, James E., Hirst, Gillian L., Asare, Smita, DeMichele, Angela, Hylton, Nola, Yee, Douglas, Esserman, Laura, Veer, Laura van't, Sirota, Marina

Source: Frontiers in Oncology; 2023, p1-11, 11p

Subject Terms: BREAST tumor treatment, DRUG repositioning, TRIPLE-negative breast cancer, ESTROGEN antagonists, HORMONE receptor positive breast cancer, DRUG resistance

Aurora kinases shed light on resistance to EGFR inhibition in head and neck cancer

Authors: Kim, Donghwa, Bandyopadhyay, Sourav

Source: In EBioMedicine March 2021 65

Global Analysis of Host-Pathogen Interactions that Regulate Early-Stage HIV-1 Replication

Authors: König, Renate, Zhou, Yingyao, Elleder, Daniel, Diamond, Tracy L., Bonamy, Ghislain M.C., Irelan, Jeffrey T., Chiang, Chih-yuan, Tu, Buu P., De Jesus, Paul D., Lilley, Caroline E., Seidel, Shannon, Opaluch, Amanda M., Caldwell, Jeremy S., Weitzman, Matthew D., Kuhen, Kelli L., Bandyopadhyay, Sourav, Ideker, Trey, Orth, Anthony P., Miraglia, Loren J., Bushman, Frederic D., Young, John A., Chanda, Sumit K.

Source: In Cell 3 October 2008 135(1):49-60

A Genetic Interaction Map of RNA-Processing Factors Reveals Links between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing

Authors: Wilmes, Gwendolyn M., Bergkessel, Megan, Bandyopadhyay, Sourav, Shales, Michael, Braberg, Hannes, Cagney, Gerard, Collins, Sean R., Whitworth, Gregg B., Kress, Tracy L., Weissman, Jonathan S., Ideker, Trey, Guthrie, Christine, Krogan, Nevan J.

Source: In Molecular Cell 2008 32(5):735-746

Novel Regulators of Macropinocytosis-Dependent Growth Revealed by Informer Set Library Screening in Pancreatic Cancer Cells.

Authors: Kim, Sang Hoon, Song, Jae Ho, Kim, Min Ji, Song, Mun Gu, Ku, Angel A., Bandyopadhyay, Sourav, McCormick, Frank, Kim, Sung Eun

Source: Metabolites (2218-1989); Sep2022, Vol. 12 Issue 9, p831-N.PAG, 11p

Subject Terms: PANCREATIC cancer, GROWTH regulators, EARLY detection of cancer, INFORMERS, PINOCYTOSIS

Coevolution within a transcriptional network by compensatory trans and cis mutations.

Authors: Kuo, Dwight, Licon, Katherine, Bandyopadhyay, Sourav

Source: Genome Research; December 2010, Vol. 20 Issue 12, p1672-1678, 7p

Systematic identification of functional orthologs based on protein network comparison.

Authors: Bandyopadhyay, Sourav, Sharan, Roded, Ideker, Trey

Source: Genome Research; March 2006, Vol. 16 Issue 3, p428-435, 8p