Code-free development and deployment of deep segmentation models for digital pathology

Authors: Pettersen, Henrik Sahlin, Belevich, Ilya, Røyset, Elin Synnøve, Smistad, Erik, Jokitalo, Eija, Reinertsen, Ingerid, Bakke, Ingunn, Pedersen, André

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Computer Vision and Pattern Recognition, Electrical Engineering and Systems Science - Image and Video Processing, I.4.6, J.3

Access URL: http://arxiv.org/abs/2111.08430

Subtle Protective Roles of Clusterin in Gastric Metaplasia After Acute Oxyntic Atrophy

Authors: Vange, Pål, Bruland, Torunn, Munkvold, Bjørn, Røyset, Elin Synnøve, Gleave, Martin, Bakke, Ingunn

Source: In Cellular and Molecular Gastroenterology and Hepatology 2019 7(1):246-250

Ulcer‐associated cell lineage expresses genes involved in regeneration and is hallmarked by high neutrophil gelatinase‐associated lipocalin (NGAL) levels

Authors: Thorsvik, Silje, van Beelen Granlund, Atle, Svendsen, Tarjei D, Bakke, Ingunn, Røyset, Elin S, Flo, Trude H, Damås, Jan K, Østvik, Ann E, Bruland, Torunn, Sandvik, Arne K

Source: Journal of pathology. 248(3):316-325

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100084202153.0x000001&indx=1&recIds=ETOCvdc_100084202153.0x000001

Expression of neutrophil gelatinase-associated lipocalin (NGAL) in the gut in Crohn's disease

Authors: Thorsvik, Silje, Bakke, Ingunn, van Beelen Granlund, Atle, Røyset, Elin Synnøve, Damås, Jan Kristian, Østvik, Ann Elisabet, Sandvik, Arne Kristian

Source: Cell and tissue research. 374(2):339-348

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100118366130.0x000001&indx=1&recIds=ETOCvdc_100118366130.0x000001

Regulated endocrine-specific protein 18 (RESP18) is localized to and regulated in A-like cells and G-cells in rat stomach

Authors: Erlandsen, Sten Even, Qvigstad, Gunnar, Fossmark, Reidar, Bakke, Ingunn, Chen, Duan, Sandvik, Arne K.

Source: In Regulatory Peptides 20 August 2012 177(1-3):53-59

Physiological hypoxia improves growth and functional differentiation of human intestinal epithelial organoids.

Authors: Walaas, Gunnar Andreas, Gopalakrishnan, Shreya, Bakke, Ingunn, Skovdahl, Helene Kolstad, Flatberg, Arnar, Østvik, Ann Elisabet, Sandvik, Arne Kristian, Bruland, Torunn

Source: Frontiers in Immunology; 1/30/2023, Vol. 13, p1-20, 20p

Subject Terms: LIPOCALIN-2, INFLAMMATORY bowel diseases, RNA sequencing, ENTEROENDOCRINE cells, STROMAL cell-derived factor 1

Deep learning‐based image analysis reveals significant differences in the number and distribution of mucosal CD3 and γδ T cells between Crohn's disease and ulcerative colitis.

Authors: Røyset, Elin Synnøve, Sahlin Pettersen, Henrik P, Xu, Weili, Larbi, Anis, Sandvik, Arne K, Steigen, Sonja E, Catalan‐Serra, Ignacio, Bakke, Ingunn

Source: Journal of Pathology: Clinical Research; Jan2023, Vol. 9 Issue 1, p18-31, 14p

Subject Terms: CROHN'S disease, T cells, ULCERATIVE colitis, CD3 antigen, IMAGE analysis, INFLAMMATORY bowel diseases

Sa1332 GASTRIC CORPUS MUCOSAL HYPERPLASIA AND NEUROENDOCRINE CELL HYPERPASIA, BUT NOT SPASMOLYTIC POLYPEPTICE-EXPRESSING METAPLASIA, IS PREVENTED BY A GASTRIN-BLOCKER IN H+/K+ ATPASE BETA SUBUNIT DEFICIENT MICE

Authors: Aasarød, Kristin M., Waldum, Helge, Stunes, Astrid K., Sandvik, Arne K., Flatberg, Arnar, Mjønes, Patricia G., Syversen, Unni, Bakke, Ingunn, Fossmark, Reidar

Source: Gastroenterology. 158(6):S-319-S-320

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131762030.0x000001&indx=1&recIds=ETOCvdc_100131762030.0x000001

Tu1753 - type 1 Interferon Signaling in Intestinal Epithelial Cells During Active Inflammatory Bowel Disease

Authors: Østvik, Ann Elisabet, Svendsen, Tarjei Dahl, van Beelen Granlun, Atle, Doseth, Berit, Bakke, Ingunn, Thorsvik, Silje, Afroz, Wahida, Skovdal, Helene Kolstad, Mollnes, Tom Eirik, Gustafsson, Bjorn I., Sandvik, Arne K., Bruland, Torunn

Source: Gastroenterology. 154(1):S-1010-S-1010

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100150138613.0x000001&indx=1&recIds=ETOCvdc_100150138613.0x000001

Ciprofibrate stimulates the gastrin-producing cell by acting luminally on antral PPAR-α.

Authors: Martinsen, Tom C., Bakke, Ingunn, Chen, Duan

Source: American Journal of Physiology; December 2005 pt1, Vol. 289 Issue 6, pG1052-G1060, 9p

Tofacitinib Downregulates TNF and Poly(I:C)-Dependent MHC-II Expression in the Colonic Epithelium.

Authors: Gopalakrishnan, Shreya, Hansen, Marianne Doré, Skovdahl, Helene Kolstad, Roseth, Ingrid Aass, van Beelen Granlund, Atle, Østvik, Ann Elisabet, Bakke, Ingunn, Sandvik, Arne Kristian, Bruland, Torunn

Source: Frontiers in Immunology; 5/17/2022, Vol. 13, p1-15, 15p

Subject Terms: INFLAMMATORY bowel diseases, TUMOR necrosis factors, JANUS kinases, ANTIGEN presentation, ULCERATIVE colitis

PACAP stimulates gastric acid secretion in the rat by inducing histamine release.

Authors: Sandvik, Arne K., Cui, Guanglin, Bakke, Ingunn

Source: American Journal of Physiology; October 2001 pt1, Vol. 281 Issue 4, pG997-G1003, 7p

Profound gene expression changes in the epithelial monolayer of active ulcerative colitis and Crohn's disease.

Authors: Sæterstad, Siri, Østvik, Ann Elisabet, Røyset, Elin Synnøve, Bakke, Ingunn, Sandvik, Arne Kristian, Granlund, Atle van Beelen

Source: PLoS ONE; 3/11/2022, Vol. 17 Issue 3, p1-23, 23p

Subject Terms: INFLAMMATORY bowel diseases, ULCERATIVE colitis, GENE expression, CROHN'S disease, AP-1 transcription factor, GENE regulatory networks, MAJOR histocompatibility complex

Su2035 - Neutrophil Gelatinase-Associated Lipocalin (NGAL) is Expressed in Regenerative Intestinal Epithelium and Proinflammatory Cytokines Induce NGAL in Human Colonoids

Authors: Thorsvik, Silje, van Beelen Granlun, Atle, Svendsen, Tarjei Dahl, Bakke, Ingunn, Røyset, Elin S., Afroz, Wahida, Doseth, Berit, Flo, trude H., Damås, Jan K., Østvik, Ann Elisabet, Bruland, Torunn, Sandvik, Arne K.

Source: Gastroenterology. 154(6):S-1364-S-1365

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100066223708.0x000001&indx=1&recIds=ETOCvdc_100066223708.0x000001

Mucosal and faecal neutrophil gelatinase-associated lipocalin as potential biomarkers for collagenous colitis.

Authors: Bakke, Ingunn^1,2 (AUTHOR), Walaas, Gunnar Andreas¹ (AUTHOR), Bruland, Torunn^1,3 (AUTHOR), Røyset, Elin Synnøve^1,2,4 (AUTHOR), van Beelen Granlund, Atle^1,5 (AUTHOR), Escudero-Hernández, Celia^6,7 (AUTHOR), Thorsvik, Silje^1,3,8 (AUTHOR), Münch, Andreas^6,9 (AUTHOR), Sandvik, Arne Kristian^1,3,5,8 (AUTHOR), Østvik, Ann Elisabet^1,3,8 (AUTHOR) ann.e.ostvik@ntnu.no

Source: Journal of Gastroenterology. Oct2021, Vol. 56 Issue 10, p914-927. 14p.

Subject Terms: *LIPOCALIN-2, *IRRITABLE colon, *INFLAMMATORY bowel diseases, *GENE expression, *COLITIS, *CALPROTECTIN

PPARα stimulates the rat gastrin-producing cell

Authors: Bakke, Ingunn ^*, Hammer, Tommy A, Sandvik, Arne K, Waldum, Helge L

Source: In Molecular and Cellular Endocrinology 2002 195(1):89-97

Rat parietal cells express CCK 2 receptor mRNA: gene expression analysis of single cells isolated by laser-assisted microdissection

Authors: Tømmerås, Karin, Bakke, Ingunn, Sandvik, Arne K, Larsson, Erik, Waldum, Helge L

Source: In Biochemical and Biophysical Research Communications 2002 297(2):335-340

Intestinal Epithelial Cells Express Immunomodulatory ISG15 During Active Ulcerative Colitis and Crohn's Disease.

Authors: Østvik, Ann Elisabet, Svendsen, Tarjei Dahl, Granlund, Atle van Beelen, Doseth, Berit, Skovdahl, Helene Kolstad, Bakke, Ingunn, Thorsvik, Silje, Afroz, Wahida, Walaas, Gunnar Andreas, Mollnes, Tom Eirik, Gustafsson, Björn Inge, Sandvik, Arne Kristian, Bruland, Torunn

Source: Journal of Crohn's & Colitis; Jul2020, Vol. 14 Issue 7, p920-934, 15p

Connective tissue growth factor is activated by gastrin and involved in gastrin-induced migration and invasion

Authors: Bhandari, Sabin, Bakke, Ingunn, Kumar, J., Beisvag, Vidar, Sandvik, Arne K., Thommesen, Liv, Varro, Andrea, Nørsett, Kristin G.

Source: In Biochemical and Biophysical Research Communications 17 June 2016 475(1):119-124

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