Deep generative AI models analyzing circulating orphan non-coding RNAs enable detection of early-stage lung cancer

Authors: Mehran Karimzadeh, Amir Momen-Roknabadi, Taylor B. Cavazos, Yuqi Fang, Nae-Chyun Chen, Michael Multhaup, Jennifer Yen, Jeremy Ku, Jieyang Wang, Xuan Zhao, Philip Murzynowski, Kathleen Wang, Rose Hanna, Alice Huang, Diana Corti, Dang Nguyen, Ti Lam, Seda Kilinc, Patrick Arensdorf, Kimberly H. Chau, Anna Hartwig, Lisa Fish, Helen Li, Babak Behsaz, Olivier Elemento, James Zou, Fereydoun Hormozdiari, Babak Alipanahi, Hani Goodarzi

Source: Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/bfa41ff610b944e99ea17c73581fe401

DeepNull models non-linear covariate effects to improve phenotypic prediction and association power

Authors: Zachary R. McCaw, Thomas Colthurst, Taedong Yun, Nicholas A. Furlotte, Andrew Carroll, Babak Alipanahi, Cory Y. McLean, Farhad Hormozdiari

Source: Nature Communications, Vol 13, Iss 1, Pp 1-10 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/f951999ae2b6444297e7d38d051566d6

Disease risk scores for skin cancers

Authors: Pierre Fontanillas, Babak Alipanahi, Nicholas A. Furlotte, Michaela Johnson, Catherine H. Wilson, andMe Research Team, Steven J. Pitts, Robert Gentleman, Adam Auton

Source: Nature Communications, Vol 12, Iss 1, Pp 1-13 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/273f51d51c9d4f4699e009a6a5c1fba9

Correspondence between cerebral glucose metabolism and BOLD reveals relative power and cost in human brain

Authors: Ehsan Shokri-Kojori, Dardo Tomasi, Babak Alipanahi, Corinde E. Wiers, Gene-Jack Wang, Nora D. Volkow

Source: Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e22420fc8d8c4ddd878f1e42f5cd7d1c

Replication and characterization of CADM2 and MSRA genes on human behavior

Authors: Brian Boutwell, David Hinds, Michelle Agee, Babak Alipanahi, Adam Auton, Robert K. Bell, Katarzyna Bryc, Sarah L. Elson, Pierre Fontanillas, Nicholas A. Furlotte, David A. Hinds, Bethann S. Hromatka, Karen E. Huber, Aaron Kleinman, Nadia K. Litterman, Matthew H. McIntyre, Joanna L. Mountain, Carrie A.M. Northover, J.Fah Sathirapongsasuti, Olga V. Sazonova, Janie F. Shelton, Suyash Shringarpure, Chao Tian, Joyce Y. Tung, Vladimir Vacic, Catherine H. Wilson

Source: Heliyon, Vol 3, Iss 7 (2017)

Subject Terms: Genetics, Clinical psychology, Psychiatry, Neuroscience, Psychology, Science (General), Q1-390, Social sciences (General), H1-99

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405844017317346; https://doaj.org/toc/2405-8440

Access URL: https://doaj.org/article/aec5bc6336aa46cf8add66ddeb618e34

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PICKY: a novel SVD-based NMR spectra peak picking method.

Authors: Babak Alipanahi, Xin Gao, Emre Karakoc, Logan Donaldson, Ming Li

Source: Bioinformatics. Jun2009, Vol. 25 Issue 12, pi268-i268. 1p.

Subject Terms: *NUCLEAR magnetic resonance spectroscopy, *SINGULAR value decomposition, *EXTRACTION techniques, *BIOLOGICAL mathematical modeling, *BIOINFORMATICS, *PROTEIN structure