Optimization of energy production and central carbon metabolism in a non-respiring eukaryote

Authors: Alam, Sara, Gu, Ying, Reichert, Polina, Bähler, Jürg, Oliferenko, Snezhana

Source: In Current Biology 5 June 2023 33(11):2175-2186

High-Throughput, High-Precision Colony Phenotyping with Pyphe

Authors: Kamrad, Stephan, Bähler, Jürg, Ralser, Markus

Source: Methods in molecular biology. 2477:381-398

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN629265362&indx=1&recIds=ETOCRN629265362

Revised fission yeast gene and allele nomenclature guidelines for machine readability.

Authors: Lera-Ramírez, Manuel¹, manuel.lera-ramirez@ucl.ac.uk, Bähler, Jürg¹, Mata, Juan², Rutherford, Kim², Hoffman, Charles S.³, Lambert, Sarah⁴, Oliferenko, Snezhana^5,6, Martin, Sophie G.⁷, Gould, Kathleen L.⁸, Li-Lin Du⁹, Sabatinos, Sarah A.¹⁰, Forsburg, Susan L.¹¹, Nielsen, Olaf¹², Nurse, Paul⁵, Wood, Valerie², vw253@cam.ac.uk

Source: Genetics; Nov2023, Vol. 225 Issue 3, p1-10, 10p

Ageing-associated long non-coding RNA extends lifespan and reduces translation in non-dividing cells.

Authors: Anver, Shajahan, Sumit, Ahmed Faisal, Sun, Xi-Ming, Hatimy, Abubakar, Thalassinos, Konstantinos, Marguerat, Samuel, Alic, Nazif, Bähler, Jürg

Source: EMBO Reports; Nov2024, Vol. 25 Issue 11, p4921-4949, 29p

De Novo and Bi-allelic Pathogenic Variants in NARS1 Cause Neurodevelopmental Delay Due to Toxic Gain-of-Function and Partial Loss-of-Function Effects

Authors: Manole, Andreea, Efthymiou, Stephanie, O’Connor, Emer, Mendes, Marisa I., Jennings, Matthew, Maroofian, Reza, Davagnanam, Indran, Mankad, Kshitij, Lopez, Maria Rodriguez, Salpietro, Vincenzo, Harripaul, Ricardo, Badalato, Lauren, Walia, Jagdeep, Francklyn, Christopher S., Athanasiou-Fragkouli, Alkyoni, Sullivan, Roisin, Desai, Sonal, Baranano, Kristin, Zafar, Faisal, Rana, Nuzhat, Ilyas, Muhammed, Horga, Alejandro, Kara, Majdi, Mattioli, Francesca, Goldenberg, Alice, Griffin, Helen, Piton, Amelie, Henderson, Lindsay B., Kara, Benyekhlef, Aslanger, Ayca Dilruba, Raaphorst, Joost, Pfundt, Rolph, Portier, Ruben, Shinawi, Marwan, Kirby, Amelia, Christensen, Katherine M., Wang, Lu, Rosti, Rasim O., Paracha, Sohail A., Sarwar, Muhammad T., Jenkins, Dagan, Ahmed, Jawad, Santoni, Federico A., Ranza, Emmanuelle, Iwaszkiewicz, Justyna, Cytrynbaum, Cheryl, Weksberg, Rosanna, Wentzensen, Ingrid M., Guillen Sacoto, Maria J., Si, Yue, Telegrafi, Aida, Andrews, Marisa V., Baldridge, Dustin, Gabriel, Heinz, Mohr, Julia, Oehl-Jaschkowitz, Barbara, Debard, Sylvain, Senger, Bruno, Fischer, Frédéric, van Ravenwaaij, Conny, Fock, Annemarie J.M., Stevens, Servi J.C., Bähler, Jürg, Nasar, Amina, Mantovani, John F., Manzur, Adnan, Sarkozy, Anna, Smith, Desirée E.C., Salomons, Gajja S., Ahmed, Zubair M., Riazuddin, Shaikh, Riazuddin, Saima, Usmani, Muhammad A., Seibt, Annette, Ansar, Muhammad, Antonarakis, Stylianos E., Vincent, John B., Ayub, Muhammad, Grimmel, Mona, Jelsig, Anne Marie, Hjortshøj, Tina Duelund, Karstensen, Helena Gásdal, Hummel, Marybeth, Haack, Tobias B., Jamshidi, Yalda, Distelmaier, Felix, Horvath, Rita, Gleeson, Joseph G., Becker, Hubert, Mandel, Jean-Louis, Koolen, David A., Houlden, Henry

Source: In The American Journal of Human Genetics 6 August 2020 107(2):311-324

Genetic effects on molecular network states explain complex traits

Authors: Weith, Matthias, Großbach, Jan, Clement‐Ziza, Mathieu, Gillet, Ludovic, Rodríguez‐López, María, Marguerat, Samuel, Workman, Christopher T, Picotti, Paola, Bähler, Jürg, Aebersold, Ruedi, Beyer, Andreas

Source: Molecular systems biology. 19(8)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100189984615.0x000001&indx=1&recIds=ETOCvdc_100189984615.0x000001

Stress induces remodelling of yeast interaction and co-expression networks

Authors: Lehtinen, Sonja, Marsellach, Francesc Xavier, Codlin, Sandra, Schmidt, Alexander, Clément-Ziza, Mathieu, Beyer, Andreas, Bähler, Jürg, Orengo, Christine, Pancaldi, Vera

Subject Terms: Quantitative Biology - Molecular Networks, Quantitative Biology - Cell Behavior, Quantitative Biology - Genomics

Access URL: http://arxiv.org/abs/1303.4981

Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation

Authors: Saint, Malika, Bertaux, François, Tang, Wenhao, Sun, Xi-Ming, Game, Laurence, Köferle, Anna, Bähler, Jürg, Shahrezaei, Vahid, Marguerat, Samuel

Source: Nature microbiology. 4(3):480-491

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100130017296.0x000001&indx=1&recIds=ETOCvdc_100130017296.0x000001

General amino acid control in fission yeast is regulated by a nonconserved transcription factor, with functions analogous to Gcn4/Atf4

Authors: Duncan, Caia D. S., Rodríguez-López, María, Ruis, Phil, Bähler, Jürg, Mata, Juan

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Feb . 115(8), E1829-E1838.

Access URL: https://www.jstor.org/stable/26507603

Fission stories: using PomBase to understand Schizosaccharomyces pombe biology.

Authors: Harris, Midori A.¹, mah79@cam.ac.uk, Rutherford, Kim M.¹, Hayles, Jacqueline², Lock, Antonia^3,4, Bähler, Jürg³, Oliver, Stephen G.¹, Mata, Juan¹, Wood, Valerie¹, vw253@cam.ac.uk

Source: Genetics; Apr2022, Vol. 220 Issue 4, p1-6, 6p

Critical importance of DNA binding for CSL protein functions in fission yeast.

Authors: Marešová, Anna, Oravcová, Martina, Rodríguez-López, María, Hradilová, Miluše, Zemlianski, Viacheslav, Häsler, Robert, Hernández, Pablo, Bähler, Jürg, Převorovský, Martin

Source: Journal of Cell Science; Apr2024, Vol. 137 Issue 8, p1-16, 16p

Subject Terms: DNA-binding proteins, GENE expression, YEAST, LINCRNA, LIPID metabolism, RNA metabolism

Role of Polo Kinase and Mid1p in Determining the Site of Cell Division in Fission Yeast

Authors: Bähler, Jürg, Steever, Alexander B., Wheatley, Sally, Wang, Yu-li, Pringle, John R., Gould, Kathleen L., McCollum, Dannel

Source: The Journal of Cell Biology, 1998 Dec . 143(6), 1603-1616.

Access URL: https://www.jstor.org/stable/1619000

Perturbed fatty-acid metabolism is linked to localized chromatin hyperacetylation, increased stress-response gene expression and resistance to oxidative stress.

Authors: Princová, Jarmila¹, Salat-Canela, Clàudia², Daněk, Petr¹, Marešová, Anna¹, de Cubas, Laura², Bähler, Jürg³, Ayté, José², Hidalgo, Elena², Převorovský, Martin¹, prevorov@natur.cuni.cz

Source: PLoS Genetics; 1/10/2023, Vol. 18 Issue 1, p1-26, 26p

New species, genome assemblies, and tools shed fresh light on fission yeasts.

Authors: D'Angiolo, Melania, Bähler, Jürg

Source: Yeast; Mar2024, Vol. 41 Issue 3, p69-72, 4p

Cell-based screens and phenomics with fission yeast

Authors: Rallis, Charalampos, Bähler, Jürg

Source: Critical reviews in biochemistry and molecular biology. 51(2):86-95

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129170095.0x000001&indx=1&recIds=ETOCvdc_100129170095.0x000001

Spotsizer: High-throughput quantitative analysis of microbial growth

Authors: Bischof, Leanne, Převorovský, Martin, Rallis, Charalampos, Jeffares, Daniel C., Arzhaeva, Yulia, Bähler, Jürg

Source: Biotechniques. 61(4):191-201

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100124638229.0x000001&indx=1&recIds=ETOCvdc_100124638229.0x000001

CSL protein regulates transcription of genes required to prevent catastrophic mitosis in fission yeast

Authors: Převorovský, Martin, Oravcová, Martina, Zach, Róbert, Jordáková, Anna, Bähler, Jürg, Půta, František, Folk, Petr

Source: Cell cycle. 15(22):3082-3093

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100052045895.0x000001&indx=1&recIds=ETOCvdc_100052045895.0x000001

The Nrd1-like protein Seb1 coordinates cotranscriptional 3′ end processing and polyadenylation site selection

Authors: Lemay, Jean-François, Marguerat, Samuel, Larochelle, Marc, Liu, Xiaochuan, van Nues, Rob, Hunyadkürti, Judit, Hoque, Mainul, Tian, Bin, Granneman, Sander, Bähler, Jürg

Source: Genes & development. 30(13):1558-1572

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN607221155&indx=1&recIds=ETOCRN607221155

Broad functional profiling of fission yeast proteins using phenomics and machine learning.

Authors: Rodríguez-López, María, Bordin, Nicola, Lees, Jon, Scholes, Harry, Hassan, Shaimaa, Saintain, Quentin, Kamrad, Stephan, Orengo, Christine, Bähler, Jürg

Source: eLife; 10/3/2023, p1-25, 25p

Extensive Mass Spectrometry-based Analysis of the Fission Yeast Proteome: THE SCHIZOSACCHAROMYCES POMBE PEPTIDEATLAS

Authors: Gunaratne, Jayantha ^{‡, §}, Schmidt, Alexander ^{§, ¶, ‖}, Quandt, Andreas ^{§, **}, Neo, Suat Peng ^‡, Saraç, Ömer Sinan ^‡‡, Gracia, Tannia ^§§, Loguercio, Salvatore ^‡‡, Ahrné, Erik ^¶, Xia, Rachel Li Hai ^‡, Tan, Keng Hwa ^‡, Lössner, Christopher ^‡, Bähler, Jürg ^§§, Beyer, Andreas ^‡‡, Blackstock, Walter ^‡, Aebersold, Ruedi ^{‖, **, ¶¶}

Source: In Molecular & Cellular Proteomics June 2013 12(6):1741-1751