Urban and agricultural influences on the coastal dissolved organic matter pool in the Algoa Bay estuaries

Authors: Kalinski, Jarmo-Charles J., Noundou, Xavier Siwe, Petras, Daniel, Matcher, Gwynneth F., Polyzois, Alexandros, Aron, Allegra T., Gentry, Emily C., Bornman, Thomas G., Adams, Janine B., Dorrington, Rosemary A.

Source: In Chemosphere May 2024 355

The underappreciated diversity of bile acid modifications

Authors: Mohanty, Ipsita, Mannochio-Russo, Helena, Schweer, Joshua V., El Abiead, Yasin, Bittremieux, Wout, Xing, Shipei, Schmid, Robin, Zuffa, Simone, Vasquez, Felipe, Muti, Valentina B., Zemlin, Jasmine, Tovar-Herrera, Omar E., Moraïs, Sarah, Desai, Dhimant, Amin, Shantu, Koo, Imhoi, Turck, Christoph W., Mizrahi, Itzhak, Kris-Etherton, Penny M., Petersen, Kristina S., Fleming, Jennifer A., Huan, Tao, Patterson, Andrew D., Siegel, Dionicio, Hagey, Lee R., Wang, Mingxun, Aron, Allegra T., Dorrestein, Pieter C.

Source: In Cell 28 March 2024 187(7):1801-1818

Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform

Authors: Stincone, Paolo, Shah, Abzer K. Pakkir, Schmid, Robin, Graves, Lana G., Lambidis, Stilianos P., Torres, Ralph R., Xia, Shu-Ning, Minda, Vidit, Aron, Allegra T., Wang, Mingxun

Source: Analytical chemistry. 95(34):12673-12682

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN633652714&indx=1&recIds=ETOCRN633652714

Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol

Authors: Pendergraft, Matthew A., Belda-Ferre, Pedro, Petras, Daniel, Morris, Clare K., Mitts, Brock A., Aron, Allegra T., Bryant, MacKenzie, Schwartz, Tara, Ackermann, Gail, Humphrey, Greg

Source: Environmental science & technology. 57(10):4071-4081

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631920492&indx=1&recIds=ETOCRN631920492

In vivo bioluminescence imaging of labile iron in xenograft models and liver using FeAL-1, an iron-activatable form of D-luciferin

Authors: Gonciarz, Ryan L., Jiang, Honglin, Tram, Linh, Hugelshofer, Cedric L., Ekpenyong, Oscar, Knemeyer, Ian, Aron, Allegra T., Chang, Christopher J., Flygare, John A., Collisson, Eric A., Renslo, Adam R.

Source: In Cell Chemical Biology 16 November 2023 30(11):1468-1477

Environmental metabolomics characterization of modern stromatolites and annotation of ibhayipeptolides.

Authors: Neuhaus, George F.¹ (AUTHOR), Aron, Allegra T.^2,3 (AUTHOR), Isemonger, Eric W.⁴ (AUTHOR), Petras, Daniel^2,3 (AUTHOR), Waterworth, Samantha C.⁵ (AUTHOR), Madonsela, Luthando S.⁴ (AUTHOR), Gentry, Emily C.^2,3 (AUTHOR), Siwe Noundou, Xavier⁴ (AUTHOR), Kalinski, Jarmo-Charles J⁴ (AUTHOR), Polyzois, Alexandros⁴ (AUTHOR), Habiyaremye, Julius C.¹ (AUTHOR), Redick, Margaret A.¹ (AUTHOR), Kwan, Jason C.⁵ (AUTHOR), Dorrington, Rosemary A.⁴ (AUTHOR), Dorrestein, Pieter C.^2,3 (AUTHOR), McPhail, Kerry L.¹ (AUTHOR) kerry.mcphail@oregonstate.edu

Source: PLoS ONE. 5/23/2024, Vol. 19 Issue 5, p1-28. 28p.

Subject Terms: *STROMATOLITES, *MICROBIAL mats, *ENVIRONMENTAL sampling, *SMALL molecules, *MICROBIAL diversity, *METABOLOMICS

Geographic Terms: EASTERN Cape (South Africa)

Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine “matalafi”

Authors: Molimau-Samasoni, Seeseei, Woolner, Victoria Helen, Foliga, Su’emalo Talie, Robichon, Katharina, Patel, Vimal, Andreassend, Sarah K., Sheridan, Jeffrey P., Kawa, Tama Te, Gresham, David, Miller, Darach, Sinclair, Daniel J., La Flamme, Anne C., Melnik, Alexey V., Aron, Allegra, Dorrestein, Pieter C., Atkinson, Paul H., Keyzers, Robert A., Munkacsi, Andrew B.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Nov 01. 118(45), 1-11.

Access URL: https://www.jstor.org/stable/27093647

Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data

Authors: Pakkir Shah, Abzer K., Walter, Axel, Ottosson, Filip, Russo, Francesco, Navarro-Diaz, Marcelo, Boldt, Judith, Kalinski, Jarmo-Charles J., Kontou, Eftychia Eva, Elofson, James, Polyzois, Alexandros, González-Marín, Carolina, Farrell, Shane, Aggerbeck, Marie R., Pruksatrakul, Thapanee, Chan, Nathan, Wang, Yunshu, Pöchhacker, Magdalena, Brungs, Corinna, Cámara, Beatriz, Caraballo-Rodríguez, Andrés Mauricio, Cumsille, Andres, de Oliveira, Fernanda, Dührkop, Kai, El Abiead, Yasin, Geibel, Christian, Graves, Lana G., Hansen, Martin, Heuckeroth, Steffen, Knoblauch, Simon, Kostenko, Anastasiia, Kuijpers, Mirte C. M., Mildau, Kevin, Papadopoulos Lambidis, Stilianos, Portal Gomes, Paulo Wender, Schramm, Tilman, Steuer-Lodd, Karoline, Stincone, Paolo, Tayyab, Sibgha, Vitale, Giovanni Andrea, Wagner, Berenike C., Xing, Shipei, Yazzie, Marquis T., Zuffa, Simone, de Kruijff, Martinus, Beemelmanns, Christine, Link, Hannes, Mayer, Christoph, van der Hooft, Justin J. J., Damiani, Tito, Pluskal, Tomáš, Dorrestein, Pieter, Stanstrup, Jan, Schmid, Robin, Wang, Mingxun, Aron, Allegra, Ernst, Madeleine, Petras, Daniel

Source: Nature Protocols; January 2025, Vol. 20 Issue: 1 p92-162, 71p

Iron Chaperone Poly rC Binding Protein 1 Protects Mouse Liver From Lipid Peroxidation and Steatosis

Authors: Protchenko, Olga, Baratz, Ethan, Jadhav, Shyamalagauri, Li, Fengmin, Shakoury‐Elizeh, Minoo, Gavrilova, Oksana, Ghosh, Manik C., Cox, James E., Maschek, J. Alan, Tyurin, Vladimir A., Tyurina, Yulia Y., Bayir, Hülya, Aron, Allegra T., Chang, Christopher J., Kagan, Valerian E., Philpott, Caroline C.

Source: Hepatology. 73(3):1176-1193

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100116945866.0x000001&indx=1&recIds=ETOCvdc_100116945866.0x000001

MDM2 and MDMX promote ferroptosis by PPARα-mediated lipid remodeling

Authors: Venkatesh, Divya, O Brien, Nicholas A., Zandkarimi, Fereshteh, Tong, David R., Stokes, Michael E., Dunn, Denise E., Kengmana, Everett S., Aron, Allegra T., Klein, Alyssa M., Csuka, Joleen M.

Source: Genes & development. 34(7/8):526-543

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN624555014&indx=1&recIds=ETOCRN624555014

Identification and characterization of a small-molecule metallophore involved in lanthanide metabolism.

Authors: Zytnick, Alexa M., Gutenthaler-Tietze, Sophie M., Aron, Allegra T., Reitz, Zachary L., Manh Tri Phi, Good, Nathan M., Petras, Daniel, Daumann, Lena J., Martinez-Gomez, Norma Cecilia

Source: Proceedings of the National Academy of Sciences of the United States of America; 8/6/2024, Vol. 121 Issue 32, p1-11, 11p

Subject Terms: COPPER, METHYLOTROPHIC bacteria, RARE earth metals, ORGANIC compounds, GENE clusters

Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Leptothoe Strains of Marine Cyanobacteria.

Authors: Avalon, Nicole E., Reis, Mariana A., Thornburg, Christopher C., Williamson, R. Thomas, Petras, Daniel, Aron, Allegra T., Neuhaus, George F., Al-Hindy, Momen, Mitrevska, Jana, Ferreira, Leonor, Morais, João, El Abiead, Yasin, Glukhov, Evgenia, Alexander, Kelsey L., Vulpanovici, F. Alexandra, Bertin, Matthew J., Whitner, Syrena, Choi, Hyukjae, Spengler, Gabriella, Blinov, Kirill

Source: Journal of the American Chemical Society; 7/10/2024, Vol. 146 Issue 27, p18626-18638, 13p

Dietary iron intake has long-term effects on the fecal metabolome and microbiome.

Authors: Kostenko, Anastasiia, Zuffa, Simone, Zhi, Hui, Mildau, Kevin, Raffatellu, Manuela, Dorrestein, Pieter C, Aron, Allegra T

Source: Metallomics; Jul2024, Vol. 16 Issue 7, p1-14, 14p

Activity-based sensing fluorescent probes for iron in biological systems

Authors: Aron, Allegra T, Reeves, Audrey G, Chang, Christopher J

Source: In Current Opinion in Chemical Biology April 2018 43:113-118

In vivo bioluminescence imaging of labile iron accumulation in a murine model of Acinetobacter baumannii infection

Authors: Aron, Allegra T., Heffern, Marie C., Lonergan, Zachery R., Vander Wal, Mark N., Blank, Brian R., Spangler, Benjamin, Zhang, Yaofang, Park, Hyo Min, Stahl, Andreas, Renslo, Adam R., Skaar, Eric P., Chang, Christopher J.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 Nov . 114(48), 12669-12674.

Access URL: https://www.jstor.org/stable/26485247

Leptochelins A–C, Cytotoxic Metallophores Produced by Geographically Dispersed LeptothoeStrains of Marine Cyanobacteria

Authors: Avalon, Nicole E., Reis, Mariana A., Thornburg, Christopher C., Williamson, R. Thomas, Petras, Daniel, Aron, Allegra T., Neuhaus, George F., Al-Hindy, Momen, Mitrevska, Jana, Ferreira, Leonor, Morais, João, El Abiead, Yasin, Glukhov, Evgenia, Alexander, Kelsey L., Vulpanovici, F. Alexandra, Bertin, Matthew J., Whitner, Syrena, Choi, Hyukjae, Spengler, Gabriella, Blinov, Kirill, Almohammadi, Ameen M., Shaala, Lamiaa A., Kew, William R., Paša-Tolić, Ljiljana, Youssef, Diaa T. A., Dorrestein, Pieter C., Vasconcelos, Vitor, Gerwick, Lena, McPhail, Kerry L., Gerwick, William H.

Source: Journal of the American Chemical Society; July 2024, Vol. 146 Issue: 27 p18626-18638, 13p

Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products.

Authors: Vitale, Giovanni Andrea, Geibel, Christian, Minda, Vidit, Wang, Mingxun, Aron, Allegra T., Petras, Daniel

Source: Natural Product Reports; Jun2024, Vol. 41 Issue 6, p885-904, 20p

Subject Terms: METABOLOMICS, NATURAL products, BIOLOGICAL systems, PHENOTYPES, CHEMICAL biology, SMALL molecules

Chapter Fourteen - Native metabolomics for mass spectrometry-based siderophore discovery

Authors: Yazzie, Marquis T. ^a, Reitz, Zachary L. ^b, Schmid, Robin ^c, Petras, Daniel ^{d, e}, Aron, Allegra T. ^{a, ⁎}

Source: In Methods in Enzymology 2024 702:317-352

Reverse metabolomics for the discovery of chemical structures from humans.

Authors: Gentry, Emily C., Collins, Stephanie L., Panitchpakdi, Morgan, Belda-Ferre, Pedro, Stewart, Allison K., Carrillo Terrazas, Marvic, Lu, Hsueh-han, Zuffa, Simone, Yan, Tingting, Avila-Pacheco, Julian, Plichta, Damian R., Aron, Allegra T., Wang, Mingxun, Jarmusch, Alan K., Hao, Fuhua, Syrkin-Nikolau, Mashette, Vlamakis, Hera, Ananthakrishnan, Ashwin N., Boland, Brigid S., Hemperly, Amy

Source: Nature; Feb2024, Vol. 626 Issue 7998, p419-426, 8p

Copper is an endogenous modulator of neural circuit spontaneous activity

Authors: Dodani, Sheel C., Firl, Alana, Chan, Jefferson, Nam, Christine I., Aron, Allegra T., Onak, Carl S., Ramos-Torres, Karla M., Paek, Jaeho, Webster, Corey M., Feller, Maria B., Chang, Christopher J.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2014 Nov . 111(46), 16280-16285.

Access URL: https://www.jstor.org/stable/43190214