Bird's-eye MApping of plasmids (BeMAp) for visualization and comparison of genomic structures of different plasmids by mapping antimicrobial resistance genes on spreadsheets

Authors: Tsuda, Yusuke, Suzuki, Masahiro, Wachino, Jun-ichi, Kimura, Kouji, Arakawa, Yoshichika

Source: In Journal of Microbiological Methods January 2023 204

Comparative Metabolomics Reveals a Bifunctional Antibacterial Conjugate from Combined-Culture of Streptomyces hygroscopicus HOK021 and Tsukamurella pulmonis TP-B0596

Authors: Asamizu, Shumpei, Pramana, Abrory Agus Cahya, Kawai, Sung-Jin, Arakawa, Yoshichika, Onaka, Hiroyasu

Source: ACS chemical biology. 17(9):2664-2672

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN630272115&indx=1&recIds=ETOCRN630272115

PCR‐based ORF typing of Klebsiella pneumoniae for rapid identification of global clones and transmission events

Authors: Nonogaki, Rina, Iijima, Anna, Kawamura, Kumiko, Kayama, Shizuo, Sugai, Motoyuki, Yagi, Tetsuya, Arakawa, Yoshichika, Doi, Yohei, Suzuki, Masahiro

Source: Journal of applied microbiology. 133(3):2050-2062

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100159906955.0x000001&indx=1&recIds=ETOCvdc_100159906955.0x000001

Dissecting the clonality of I1 plasmids using ORF-based binarized structure network analysis of plasmids (OSNAp)

Authors: Suzuki, Masahiro, Norizuki, Chihiro, Wachino, Jun-ichi, Kawamura, Kumiko, Nagano, Noriyuki, Nagano, Yukiko, Hayashi, Wataru, Kimura, Kouji, Doi, Yohei, Arakawa, Yoshichika

Source: Journal of infection and chemotherapy. 28(4):473-479

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157381309.0x000001&indx=1&recIds=ETOCvdc_100157381309.0x000001

Genomic characterisation and epidemiology of nosocomial Serratia marcescens isolates resistant to ceftazidime and their plasmids mediating rare blaTEM-61

Authors: Hayashi, Wataru, Yoshida, Satoshi, Izumi, Katsutoshi, Koide, Shota, Soga, Eiji, Takizawa, Shino, Arakawa, Yoshichika, Nagano, Yukiko, Nagano, Noriyuki

Source: In Journal of Global Antimicrobial Resistance June 2021 25:124-131

Presence of Colistin- and Tigecycline-Resistant Klebsiella pneumoniae ST29 in Municipal Wastewater Influents in Japan

Authors: Hayashi, Wataru, Iimura, Masaki, Soga, Eiji, Koide, Shota, Izumi, Katsutoshi, Yoshida, Satoshi, Arakawa, Yoshichika, Nagano, Yukiko, Nagano, Noriyuki

Source: MICROBIAL DRUG RESISTANCE -NEW YORK. 27(10):1433-1442

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100132340828.0x000001&indx=1&recIds=ETOCvdc_100132340828.0x000001

Aminoglycoside Resistance: Updates with a Focus on Acquired 16S Ribosomal RNA Methyltransferases

Authors: Wachino, Jun-Ichi, Doi, Yohei, Arakawa, Yoshichika

Source: In Infectious Disease Clinics of North America December 2020 34(4):887-902

Improved disk diffusion method for simple detection of group B streptococci with reduced penicillin susceptibility (PRGBS)

Authors: Goto, Rikuko, Jin, Wanchun, Wachino, Jun-ichi, Arakawa, Yoshichika, Kimura, Kouji

Source: Diagnostic microbiology and infectious disease. 105(3)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182665754.0x000001&indx=1&recIds=ETOCvdc_100182665754.0x000001

Predominance of methicillin-resistant Staphylococcus aureus SCCmec type II-CC5 and SCCmec type IV-CC1/CC8 among companion animal clinical isolates in Japan: Findings from phylogenetic comparison with human clinical isolates

Authors: Taniguchi, Yui, Koide, Shota, Maeyama, Yoshihiko, Tamai, Kiyoko, Hayashi, Wataru, Tanaka, Hayato, Iimura, Masaki, Suzuki, Masahiro, Nagano, Yukiko, Arakawa, Yoshichika, Nagano, Noriyuki

Source: In Journal of Global Antimicrobial Resistance March 2020 20:253-259

ORF-based binarized structure network analysis of plasmids (OSNAp), a novel approach to core gene-independent plasmid phylogeny

Authors: Suzuki, Masahiro, Doi, Yohei, Arakawa, Yoshichika

Source: In Plasmid March 2020 108

Systematic research to overcome newly emerged multidrug‐resistant bacteria

Authors: Arakawa, Yoshichika

Source: Microbiology and immunology. 64(4):231-251

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100106942736.0x000001&indx=1&recIds=ETOCvdc_100106942736.0x000001

Population-level transition of capsular polysaccharide types among sequence type 1 group B Streptococcus isolates with reduced penicillin susceptibility during a long-term hospital epidemic

Authors: Nagano, Noriyuki, Koide, Shota, Hayashi, Wataru, Taniguchi, Yui, Tanaka, Hayato, Maeyama, Yoshihiko, Suzuki, Masahiro, Kimura, Kouji, Arakawa, Yoshichika, Nagano, Yukiko

Source: In International Journal of Antimicrobial Agents March 2019 53(3):203-210

High prevalence of blaCTX-M-14 among genetically diverse Escherichia coli recovered from retail raw chicken meat portions in Japan

Authors: Hayashi, Wataru, Ohsaki, Yusuke, Taniguchi, Yui, Koide, Shota, Kawamura, Kumiko, Suzuki, Masahiro, Kimura, Kouji, Wachino, Jun-ichi, Nagano, Yukiko, Arakawa, Yoshichika, Nagano, Noriyuki

Source: In International Journal of Food Microbiology 2 November 2018 284:98-104

Daptomycin Susceptibility of Group B Streptococcus

Authors: Ushino, Takumi, Jin, Wanchun, Wachino, Jun-ichi, Arakawa, Yoshichika, Kimura, Kouji

Source: Japanese journal of infectious diseases. 74(3):233-235

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN626611951&indx=1&recIds=ETOCRN626611951

Isolation of group B Streptococcus with reduced β-lactam susceptibility from pregnant women

Authors: Moroi, Hiroaki, Kimura, Kouji, Kotani, Tomomi, Tsuda, Hiroyuki, Banno, Hirotsugu, Jin, Wanchun, Wachino, Jun-ichi, Yamada, Keiko, Mitsui, Takashi, Yamashita, Mamoru, Kikkawa, Fumitaka, Arakawa, Yoshichika

Source: Emerging microbes & infections. 8(1):2-7

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100094547965.0x000001&indx=1&recIds=ETOCvdc_100094547965.0x000001

Spread of seb-Positive Methicillin-Resistant Staphylococcus aureus SCCmec Type II-ST764 Among Elderly Japanese in Nonacute Care Settings

Authors: Kawamura, Kumiko, Kitaoka, Kazuki, Kimura, Kouji, Wachino, Jun-ichi, Kondo, Takaaki, Iinuma, Yoshitsugu, Murakami, Nobuo, Fujimoto, Shuhei, Arakawa, Yoshichika

Source: MICROBIAL DRUG RESISTANCE -NEW YORK. 25(6):915-924

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100084640804.0x000001&indx=1&recIds=ETOCvdc_100084640804.0x000001

Size, functional group effects and inhibition mode of graphene oxide for IMP-1 metallo-β-lactamase

Authors: Kobayashi, Ayumu, Yamaguchi, Yoshihiro, Maruki, Sakura, Kim, Sunnam, Arakawa, Yoshichika, Kurihara, Seiji

Source: MATERIALS LETTERS. 315

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157525001.0x000001&indx=1&recIds=ETOCvdc_100157525001.0x000001

Trends in antimicrobial-drug resistance in Japan.

Authors: Arakawa, Yoshichika, Ike, Yasuyoshi, Nagasawa, Mitsuaki

Source: Emerging Infectious Diseases; November/December 2000, Vol. 6 Issue 6, p572-575, 4p

Identification of a multiresistant mosaic plasmid carrying a new segment of IS1216E-flanked optrA with integrated Tn551-ermB element in linezolid-resistant Enterococcus faecalis human isolate

Authors: Iimura, Masaki, Hayashi, Wataru, Arai, Eriko, Natori, Tatsuya, Horiuchi, Kazuki, Matsumoto, Go, Tanaka, Hayato, Soga, Eiji, Nagano, Yukiko, Arakawa, Yoshichika, Nagano, Noriyuki

Source: Journal of global antimicrobial resistance. 22:697-699

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100117343298.0x000001&indx=1&recIds=ETOCvdc_100117343298.0x000001

Prevalence of ESBL/AmpC genes and specific clones among the third-generation cephalosporin-resistant Enterobacteriaceae from canine and feline clinical specimens in Japan

Authors: Maeyama, Yoshihiko, Taniguchi, Yui, Hayashi, Wataru, Ohsaki, Yusuke, Osaka, Shunsuke, Koide, Shota, Tamai, Kiyoko, Nagano, Yukiko, Arakawa, Yoshichika, Nagano, Noriyuki

Source: Veterinary microbiology. 216:183-189

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100056638448.0x000001&indx=1&recIds=ETOCvdc_100056638448.0x000001