Short-term diet intervention comprising of olive oil, vitamin D, and omega-3 fatty acids alters the small non-coding RNA (sncRNA) landscape of human sperm

Authors: Candida Vaz, Mark Burton, Alexandra J. Kermack, Pei Fang Tan, Jason Huan, Tessa P. X. Yoo, Kerry Donnelly, Susan J. Wellstead, Dennis Wang, Helena L. Fisk, Franchesca D. Houghton, Sheena Lewis, Yap Seng Chong, Peter D. Gluckman, Ying Cheong, Nicholas S. Macklon, Philip C. Calder, Anindya Dutta, Keith M. Godfrey, Pankaj Kumar, Karen A. Lillycrop, Neerja Karnani

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-20 (2025)

Subject Terms: Sperm, Diet intervention, Small non-coding RNA, miRNA, piRNA, tRF, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/0b8e1c9fda1041009890fd23a4d43b5b

Tousled-like kinase loss confers PARP inhibitor resistance in BRCA1-mutated cancers by impeding non-homologous end joining repair

Authors: Min-ah Kim, Banseok Kim, Jihyeon Jeon, Jonghyun Lee, Hyeji Jang, Minjae Baek, Sang-Uk Seo, Dongkwan Shin, Anindya Dutta, Kyung Yong Lee

Source: Molecular Medicine, Vol 31, Iss 1, Pp 1-18 (2025)

Subject Terms: DNA damage repair, Double-stranded breaks (DSBs), Non-homologous end joining (NHEJ), Homologous recombination (HR), PARP inhibitor, Tousled-like kinase, Therapeutics. Pharmacology, RM1-950, Biochemistry, QD415-436

File Description: electronic resource

Relation: https://doaj.org/toc/1528-3658

Access URL: https://doaj.org/article/c7d8e3ee14534365a2f5f8d5b5316532

Development of a polygenic score predicting drug resistance and patient outcome in breast cancer

Authors: Divya Sahu, Jeffrey Shi, Isaac Andres Segura Rueda, Ajay Chatrath, Anindya Dutta

Source: npj Precision Oncology, Vol 8, Iss 1, Pp 1-11 (2024)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2397-768X

Access URL: https://doaj.org/article/39c1c99e6bed46ceb359c74d64ddce1f

Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap

Authors: Mengxue Tian, Zhenjia Wang, Zhangli Su, Etsuko Shibata, Yoshiyuki Shibata, Anindya Dutta, Chongzhi Zang

Source: eLife, Vol 12 (2024)

Subject Terms: origins of replication, DNA replication, ORC, MCM2-7, integrative analysis, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/89548; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/52a16c2b8f924b49a9896a158173fe6d

sRNA-Effector: A tool to expedite discovery of small RNA regulators

Authors: Briana Wilson, Fatemeh Esmaeili, Matthew Parsons, Wafa Salah, Zhangli Su, Anindya Dutta

Source: iScience, Vol 27, Iss 3, Pp 109300- (2024)

Subject Terms: Nucleic acids, Gene network, Biocomputational method, Machine learning, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004224005212; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/20395f8b480449a4a5ccb59dd0674c56

Depletion of the m1A writer TRMT6/TRMT61A reduces proliferation and resistance against cellular stress in bladder cancer

Authors: Ida Monshaugen, Luisa Luna, Jayden Rhodes, Felicia Iselin Svensson Kristiansen, Anna Lång, Stig Ove Bøe, Anindya Dutta, Zhangli Su, Arne Klungland, Rune Ougland

Source: Frontiers in Oncology, Vol 13 (2024)

Subject Terms: RNA modification, bladder cancer, non-coding RNA, m1A regulators, N1-methyladenosine, TRMT6/TRMT61A, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2023.1334112/full; https://doaj.org/toc/2234-943X

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TRMT6/61A-dependent base methylation of tRNA-derived fragments regulates gene-silencing activity and the unfolded protein response in bladder cancer

Authors: Zhangli Su, Ida Monshaugen, Briana Wilson, Fengbin Wang, Arne Klungland, Rune Ougland, Anindya Dutta

Source: Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/1a40bcd9fa4a4d168a351d90a1f9fe7a

XRN2 suppresses aberrant entry of tRNA trailers into argonaute in humans and Arabidopsis.

Authors: Briana Wilson, Zhangli Su, Pankaj Kumar, Anindya Dutta

Source: PLoS Genetics, Vol 19, Iss 5, p e1010755 (2023)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

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Cryptic lncRNA-encoded ORFs: A hidden source of regulatory proteins

Authors: Anindya Dutta, Hui Li, Roger Abounader

Source: The Journal of Clinical Investigation, Vol 133, Iss 5 (2023)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/1558-8238

Access URL: https://doaj.org/article/ff01a5190b824f79af108dfdbcb7fadf

Characterization of novel small non-coding RNAs and their modifications in bladder cancer using an updated small RNA-seq workflow

Authors: Zhangli Su, Ida Monshaugen, Arne Klungland, Rune Ougland, Anindya Dutta

Source: Frontiers in Molecular Biosciences, Vol 9 (2022)

Subject Terms: bladder cancer, non-coding RNA, small RNA, RNA modification, tRNA-derived fragment, rRNA-derived fragment, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2022.887686/full; https://doaj.org/toc/2296-889X

Access URL: https://doaj.org/article/e62a02d3d1aa4953b009ba417d414862

Integrated bioinformatic pipeline using whole-exome and RNAseq data to identify germline variants correlated with cancer

Authors: Divya Sahu, Ajay Chatrath, Aakrosh Ratan, Anindya Dutta

Source: STAR Protocols, Vol 3, Iss 2, Pp 101273- (2022)

Subject Terms: Bioinformatics, Cancer, Genetics, Genomics, Sequencing, RNAseq, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666166722001538; https://doaj.org/toc/2666-1667

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Function and Therapeutic Implications of tRNA Derived Small RNAs

Authors: Briana Wilson, Anindya Dutta

Source: Frontiers in Molecular Biosciences, Vol 9 (2022)

Subject Terms: tRNA fragments, RNA therapeutics, translation inhibition, post-transcriptional regulation of gene expression, RNA silencing, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2022.888424/full; https://doaj.org/toc/2296-889X

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The pan-cancer landscape of prognostic germline variants in 10,582 patients

Authors: Ajay Chatrath, Roza Przanowska, Shashi Kiran, Zhangli Su, Shekhar Saha, Briana Wilson, Takaaki Tsunematsu, Ji-Hye Ahn, Kyung Yong Lee, Teressa Paulsen, Ewelina Sobierajska, Manjari Kiran, Xiwei Tang, Tianxi Li, Pankaj Kumar, Aakrosh Ratan, Anindya Dutta

Source: Genome Medicine, Vol 12, Iss 1, Pp 1-18 (2020)

Subject Terms: Germline variants, Single nucleotide polymorphism, Cancer biology, Pan-cancer, Survival analysis, Tumor suppressor, Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13073-020-0718-7; https://doaj.org/toc/1756-994X

Access URL: https://doaj.org/article/21ef6b3b0c234b24a63f33b4cf444aab

ATAC-Seq-based Identification of Extrachromosomal Circular DNA in Mammalian Cells and Its Validation Using Inverse PCR and FISH

Authors: Zhangli Su, Shekhar Saha, Teressa Paulsen, Pankaj Kumar, Anindya Dutta

Source: Bio-Protocol, Vol 11, Iss 9 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://bio-protocol.org/en/bpdetail?id=4003&type=0; https://doaj.org/toc/2331-8325

Access URL: https://doaj.org/article/fcfc6418dbbf4f02a9e46d5cfe6f7dd2

Germline variants predictive of tumor mutational burden and immune checkpoint inhibitor efficacy

Authors: Ajay Chatrath, Aakrosh Ratan, Anindya Dutta

Source: iScience, Vol 24, Iss 3, Pp 102248- (2021)

Subject Terms: Genetics, Genomics, Cancer, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004221002169; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/c124287608e841c9b02a35a020c7e39d

Production of Extrachromosomal MicroDNAs Is Linked to Mismatch Repair Pathways and Transcriptional Activity

Authors: Laura W. Dillon, Pankaj Kumar, Yoshiyuki Shibata, Yuh-Hwa Wang, Smaranda Willcox, Jack D. Griffith, Yves Pommier, Shunichi Takeda, Anindya Dutta

Source: Cell Reports, Vol 11, Iss 11, Pp 1749-1759 (2015)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221112471500546X; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/d9d44a78be4141a59b2fb57b3a4703ff

Expression of lncRNAs in Low-Grade Gliomas and Glioblastoma Multiforme: An In Silico Analysis.

Authors: Brian J Reon, Jordan Anaya, Ying Zhang, James Mandell, Benjamin Purow, Roger Abounader, Anindya Dutta

Source: PLoS Medicine, Vol 13, Iss 12, p e1002192 (2016)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/1549-1277; https://doaj.org/toc/1549-1676

Access URL: https://doaj.org/article/a1e3e0b04b7f4bf8968e275245fa1185

Two subunits of human ORC are dispensable for DNA replication and proliferation

Authors: Etsuko Shibata, Manjari Kiran, Yoshiyuki Shibata, Samarendra Singh, Shashi Kiran, Anindya Dutta

Source: eLife, Vol 5 (2016)

Subject Terms: DNA replication, CDC6, ORC, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/19084; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/a51fa346134f4a8ea30fff4629513949

Molecular Requirements for Transformation of Fallopian Tube Epithelial Cells into Serous Carcinoma

Authors: Amir A. Jazaeri, Jennifer L. Bryant, Hong Park, Hui Li, Neetu Dahiya, Mark H. Stoler, James Stuart Ferriss, Anindya Dutta

Source: Neoplasia: An International Journal for Oncology Research, Vol 13, Iss 10, Pp 899-911 (2011)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1476558611800783; https://doaj.org/toc/1476-5586; https://doaj.org/toc/1522-8002

Access URL: https://doaj.org/article/d50929f48c3a48b0a94f02e75ee5ec2a

A pan-cancer analysis of prognostic genes

Authors: Jordan Anaya, Brian Reon, Wei-Min Chen, Stefan Bekiranov, Anindya Dutta

Source: PeerJ, Vol 3, p e1499 (2016)

Subject Terms: Cancer, RNA-SEQ, TCGA, Pan-cancer, Prognostic, Cox, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/1499.pdf; https://peerj.com/articles/1499/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/b20fcc0e264643cf874e59a619ac7bfe