A novel clinical metaproteomics workflow enables bioinformatic analysis of host-microbe dynamics in disease

Authors: Katherine Do, Subina Mehta, Reid Wagner, Dechen Bhuming, Andrew T. Rajczewski, Amy P. N. Skubitz, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap

Source: mSphere, Vol 9, Iss 6 (2024)

Subject Terms: microbiome, metaproteomics, clinical analysis, bioinformatics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/74b450ff3e6d49c5ae62dfa92b812727

Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations

Authors: Subina Mehta, Valdemir M. Carvalho, Andrew T. Rajczewski, Olivier Pible, Björn A. Grüning, James E. Johnson, Reid Wagner, Jean Armengaud, Timothy J. Griffin, Pratik D. Jagtap

Source: Viruses, Vol 14, Iss 10, p 2205 (2022)

Subject Terms: SARS-CoV-2, variant detection, strain-specific, mass-spectrometry, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/10/2205; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/54b988d980714905b8379386a16a7840

Quantitative Proteogenomic Characterization of Inflamed Murine Colon Tissue Using an Integrated Discovery, Verification, and Validation Proteogenomic Workflow

Authors: Andrew T. Rajczewski, Qiyuan Han, Subina Mehta, Praveen Kumar, Pratik D. Jagtap, Charles G. Knutson, James G. Fox, Natalia Y. Tretyakova, Timothy J. Griffin

Source: Proteomes, Vol 10, Iss 2, p 11 (2022)

Subject Terms: inflammation, proteogenomics, bioinformatics, colon cancer, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2227-7382/10/2/11; https://doaj.org/toc/2227-7382

Access URL: https://doaj.org/article/d30189bf3c9641068ef1e79f1809d6ca