Refining genetic classification of global porcine reproductive and respiratory syndrome virus type 1 (PRRSV-1) and investigating their geographic and temporal distributions

Authors: Yim-im, Wannarat ^a, Anderson, Tavis K. ^b, Böhmer, Jan ^c, Baliellas, Jordi ^d, Stadejek, Tomasz ^e, Gauger, Phillip C. ^a, Krueger, Karen M. ^a, Vermeulen, Cornelis J. ^f, Buter, Rianne ^f, Kazlouski, Aliaksandr ^g, An, Tongqing ^h, Zhang, Jianqiang ^{a, ⁎}

Source: In Veterinary Microbiology March 2025 302

A neuraminidase-based inactivated influenza virus vaccine significantly reduced virus replication and pathology following homologous challenge in swine

Authors: Kaplan, Bryan S. ^{a, 1}, Souza, Carine K. ^{a, b}, Kimble, J. Brian ^a, Brand, Meghan Wymore ^a, Anderson, Tavis K. ^a, Gauger, Phillip C. ^b, Perez, Daniel R. ^c, Baker, Amy L. ^{a, ⁎}

Source: In Vaccine 6 February 2025 46

Divergent Pathogenesis and Transmission of Highly Pathogenic Avian Influenza A(H5N1) in Swine.

Authors: Arruda, Bailey¹, bailey.arruda@usda.gov, Vincent Baker, Amy L.¹, Buckley, Alexandra¹, Anderson, Tavis K.¹, Torchetti, Mia², Bergeson, Nichole Hines², Killian, Mary Lea², Lantz, Kristina²

Source: Emerging Infectious Diseases; Apr2024, Vol. 30 Issue 4, p738-751, 14p

Mucin 4 is a cellular biomarker of necrotizing bronchiolitis in influenza A virus infection

Authors: Arruda, Bailey L., Kanefsky, Rachel A., Hau, Samantha, Janzen, Garrett M., Anderson, Tavis K., Vincent Baker, Amy L.

Source: In Microbes and Infection September-October 2023 25(7)

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RF-Net 2: fast inference of virus reassortment and hybridization networks

Authors: Markin, Alexey, Wagle, Sanket, Anderson, Tavis K, Eulenstein, Oliver

Source: Bioinformatics. 38(8):2144-2152

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100158309067.0x000001&indx=1&recIds=ETOCvdc_100158309067.0x000001

Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs

Authors: Powell, Joshua D., Abente, Eugenio J., Chang, Jennifer, Souza, Carine K., Rajao, Daniela S., Anderson, Tavis K., Zeller, Michael A., Gauger, Phillip C., Lewis, Nicola S., Vincent, Amy L.

Source: In Virology 15 January 2021 553:94-101

Influenza a Virus Detection at the Human–Swine Interface in US Midwest Swine Farms.

Authors: Moraes, Daniel C. A., Zeller, Michael A., Thomas, Megan N., Anderson, Tavis K., Linhares, Daniel C. L., Baker, Amy L., Silva, Gustavo S., Gauger, Phillip C.

Source: Viruses (1999-4915); Dec2024, Vol. 16 Issue 12, p1921, 21p

Subject Terms: REVERSE transcriptase polymerase chain reaction, SWINE farms, WHOLE genome sequencing, PRODUCTION management (Manufacturing), WATCHFUL waiting

Modulation of human-to-swine influenza a virus adaptation by the neuraminidase low-affinity calcium-binding pocket.

Authors: Cardenas, Matias, Seibert, Brittany, Cowan, Brianna, Caceres, C. Joaquin, Gay, L. Claire, Cargnin Faccin, Flavio, Perez, Daniel R., Baker, Amy L., Anderson, Tavis K., Rajao, Daniela S.

Source: Communications Biology; 10/1/2024, Vol. 7 Issue 1, p1-16, 16p

Subject Terms: INFLUENZA A virus, H3N2 subtype, INFLUENZA A virus, INFLUENZA viruses, VIRAL proteins, VIRAL mutation, NEURAMINIDASE

Amino acid 138 in the HA of a H3N2 subtype influenza A virus increases affinity for the lower respiratory tract and alveolar macrophages in pigs.

Authors: Cardenas, Matias¹, Seibert, Brittany¹, Cowan, Brianna¹, Fraiha, Ana Luiza S.¹, Carnaccini, Silvia¹, Gay, L. Claire¹, Faccin, Flavio Cargnin¹, Caceres, C. Joaquin¹, Anderson, Tavis K.², Vincent Baker, Amy L.², Perez, Daniel R.¹, Rajao, Daniela S.¹, daniela.rajao@uga.edu

Source: PLoS Pathogens; 2/20/2024, Vol. 20 Issue 2, p1-32, 32p

A Brief Introduction to Influenza A Virus in Swine

Authors: Vincent, Amy L., Anderson, Tavis K., Lager, Kelly M.

Source: Methods in molecular biology. 2123:249-272

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN624565421&indx=1&recIds=ETOCRN624565421

Detection of live attenuated influenza vaccine virus and evidence of reassortment in the U.S. swine population

Authors: Sharma, Aditi, Zeller, Michael A., Li, Ganwu, Harmon, Karen M., Zhang, Jianqiang, Hoang, Hai, Anderson, Tavis K., Vincent, Amy L., Gauger, Phillip C.

Source: Journal of veterinary diagnostic investigation. 32(2):301-311

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN623436330&indx=1&recIds=ETOCRN623436330

Antigenic and genetic evolution of contemporary swine H1 influenza viruses in the United States

Authors: Rajao, Daniela S., Anderson, Tavis K., Kitikoon, Pravina, Stratton, Jered, Lewis, Nicola S., Vincent, Amy L.

Source: In Virology May 2018 518:45-54

Porcine reproductive and respiratory disease virus: Evolution and recombination yields distinct ORF5 RFLP 1-7-4 viruses with individual pathogenicity

Authors: van Geelen, Albert G.M., Anderson, Tavis K., Lager, Kelly M., Das, Phani B., Otis, Nicholas J., Montiel, Nestor A., Miller, Laura C., Kulshreshtha, Vikas, Buckley, Alexandra C., Brockmeier, Susan L., Zhang, Jianqiang, Gauger, Phillip C., Harmon, Karen M., Faaberg, Kay S.

Source: In Virology 1 January 2018 513:168-179

Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential.

Authors: Markin, Alexey^1,2, Ciacci Zanella, Giovana^1,3, Arendsee, Zebulun W.¹, Zhang, Jianqiang², Krueger, Karen M.², Gauger, Phillip C.², Vincent Baker, Amy L.¹, Anderson, Tavis K.¹, tavis.anderson@usda.gov

Source: PLoS Pathogens; 7/27/2023, Vol. 19 Issue 7, p1-20, 20p

Comparison of multilocus sequence types found among North American isolates of Mycoplasma bovis from cattle, bison, and deer, 2007—2017

Authors: Register, Karen B., Jelinski, Murray D., Waldner, Matthew, Boatwright, William D., Anderson, Tavis K., Hunter, David L., Hamilton, Robert G., Burrage, Pat, Shury, Todd, Bildfell, Robert

Source: Journal of veterinary diagnostic investigation. 31(6):899-904

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN622435133&indx=1&recIds=ETOCRN622435133

Regional patterns of genetic diversity in swine influenza A viruses in the United States from 2010 to 2016

Authors: Walia, Rasna R., Anderson, Tavis K., Vincent, Amy L.

Source: Influenza and other respiratory viruses. 13(3):262-273

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100090572662.0x000001&indx=1&recIds=ETOCvdc_100090572662.0x000001

Surveillance and detection of Haemaphysalis longicornis(Acari: Ixodidae) in protected areas from Georgia, USA

Authors: Fausett, Eleanor, Kirstein, Oscar D, Bellman, Stephanie, Long, Audrey, Roeske, Isabella, Cheng, Chun, Piantadosi, Anne, Anderson, Tavis K, Vazquez-Prokopec, Gonzalo M

Source: Journal of Medical Entomology; July 2024, Vol. 61 Issue: 4 p1071-1076, 6p

Potential pandemic risk of circulating swine H1N2 influenza viruses.

Authors: Le Sage, Valerie, Rockey, Nicole C., French, Andrea J., McBride, Ryan, McCarthy, Kevin R., Rigatti, Lora H., Shephard, Meredith J., Jones, Jennifer E., Walter, Sydney G., Doyle, Joshua D., Xu, Lingqing, Barbeau, Dominique J., Wang, Shengyang, Frizzell, Sheila A., Myerburg, Michael M., Paulson, James C., McElroy, Anita K., Anderson, Tavis K., Vincent Baker, Amy L., Lakdawala, Seema S.

Source: Nature Communications; 6/13/2024, Vol. 15 Issue 1, p1-13, 13p

Subject Terms: INFLUENZA viruses, SWINE influenza, PANDEMICS, AIRBORNE infection, SEASONAL influenza, HERD immunity

Chapter 22 - The Evolution of SARS-CoV-2 and Influenza A Virus at the Human–Animal Interface

Authors: Anderson, Tavis K., Medina, Rafael A., Nelson, Martha I.

Source: In Genetics and Evolution of Infectious Diseases Edition: Third Edition. 2024:549-572