Endothelial-secreted Endocan activates PDGFRA and regulates vascularity and spatial phenotype in glioblastoma

Authors: Soniya Bastola, Marat S. Pavlyukov, Neel Sharma, Yasmin Ghochani, Mayu A. Nakano, Sree Deepthi Muthukrishnan, Sang Yul Yu, Min Soo Kim, Alireza Sohrabi, Natalia P. Biscola, Daisuke Yamashita, Ksenia S. Anufrieva, Tatyana F. Kovalenko, Grace Jung, Tomas Ganz, Beatrice O’Brien, Riki Kawaguchi, Yue Qin, Stephanie K. Seidlits, Alma L. Burlingame, Juan A. Oses-Prieto, Leif A. Havton, Steven A. Goldman, Anita B. Hjelmeland, Ichiro Nakano, Harley I. Kornblum

Source: Nature Communications, Vol 16, Iss 1, Pp 1-20 (2025)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

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Phosphorylation-driven epichaperome assembly is a regulator of cellular adaptability and proliferation

Authors: Tanaya Roychowdhury, Seth W. McNutt, Chiranjeevi Pasala, Hieu T. Nguyen, Daniel T. Thornton, Sahil Sharma, Luke Botticelli, Chander S. Digwal, Suhasini Joshi, Nan Yang, Palak Panchal, Souparna Chakrabarty, Sadik Bay, Vladimir Markov, Charlene Kwong, Jeanine Lisanti, Sun Young Chung, Stephen D. Ginsberg, Pengrong Yan, Elisa De Stanchina, Adriana Corben, Shanu Modi, Mary L. Alpaugh, Giorgio Colombo, Hediye Erdjument-Bromage, Thomas A. Neubert, Robert J. Chalkley, Peter R. Baker, Alma L. Burlingame, Anna Rodina, Gabriela Chiosis, Feixia Chu

Source: Nature Communications, Vol 15, Iss 1, Pp 1-28 (2024)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

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Antibody-directed extracellular proximity biotinylation reveals that Contactin-1 regulates axo-axonic innervation of axon initial segments

Authors: Yuki Ogawa, Brian C. Lim, Shanu George, Juan A. Oses-Prieto, Joshua M. Rasband, Yael Eshed-Eisenbach, Hamdan Hamdan, Supna Nair, Francesco Boato, Elior Peles, Alma L. Burlingame, Linda Van Aelst, Matthew N. Rasband

Source: Nature Communications, Vol 14, Iss 1, Pp 1-18 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e5630d09aff045f196029e1481ff3d03

Neutrophil-inflicted vasculature damage suppresses immune-mediated optic nerve regeneration

Authors: Ryan Passino, Matthew C. Finneran, Hannah Hafner, Qian Feng, Lucas D. Huffman, Xiao-Feng Zhao, Craig N. Johnson, Riki Kawaguchi, Juan A. Oses-Prieto, Alma L. Burlingame, Daniel H. Geschwind, Larry I. Benowitz, Roman J. Giger

Source: Cell Reports, Vol 43, Iss 3, Pp 113931- (2024)

Subject Terms: CP: Neuroscience, Biology (General), QH301-705.5

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Relation: http://www.sciencedirect.com/science/article/pii/S2211124724002596; https://doaj.org/toc/2211-1247

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Non-specific recognition of histone modifications by H3K9bhb antibody

Authors: Takeshi Tsusaka, Juan A. Oses-Prieto, Christina Lee, Brian C. DeFelice, Alma L. Burlingame, Emily L. Goldberg

Source: iScience, Vol 26, Iss 7, Pp 107235- (2023)

Subject Terms: Biological sciences, Biochemistry, Molecular biology, Cell biology, Science

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Relation: http://www.sciencedirect.com/science/article/pii/S2589004223013123; https://doaj.org/toc/2589-0042

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A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production

Authors: Naomi R. Genuth, Zhen Shi, Koshi Kunimoto, Victoria Hung, Adele F. Xu, Craig H. Kerr, Gerald C. Tiu, Juan A. Oses-Prieto, Rachel E. A. Salomon-Shulman, Jeffrey D. Axelrod, Alma L. Burlingame, Kyle M. Loh, Maria Barna

Source: Nature Communications, Vol 13, Iss 1, Pp 1-19 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

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Arabidopsis ACINUS is O-glycosylated and regulates transcription and alternative splicing of regulators of reproductive transitions

Authors: Yang Bi, Zhiping Deng, Weimin Ni, Ruben Shrestha, Dasha Savage, Thomas Hartwig, Sunita Patil, Su Hyun Hong, Zhenzhen Zhang, Juan A. Oses-Prieto, Kathy H. Li, Peter H. Quail, Alma L. Burlingame, Shou-Ling Xu, Zhi-Yong Wang

Source: Nature Communications, Vol 12, Iss 1, Pp 1-13 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

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Comparative Proteomics of Coxiella like Endosymbionts (CLEs) in the Symbiotic Organs of Rhipicephalus sanguineus Ticks

Authors: Balasubramanian Cibichakravarthy, Juan A. Oses-Prieto, Michael Ben-Yosef, Alma L. Burlingame, Timothy L. Karr, Yuval Gottlieb

Source: Microbiology Spectrum, Vol 10, Iss 1 (2022)

Subject Terms: symbiosis, obligate blood feeders, comparative proteomics, gene ontology, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/1e91bba5e43b4b9eb8cda9fbcd3ecc45

Molecular Characterization of AMPA-Receptor-Containing Vesicles

Authors: John Jacob Peters, Jeremy Leitz, Juan A. Oses-Prieto, Alma L. Burlingame, Axel T. Brunger

Source: Frontiers in Molecular Neuroscience, Vol 14 (2021)

Subject Terms: AMPAR trafficking, synaptic plasiticity, proteomics, vesicle fusion, SNAREs, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fnmol.2021.754631/full; https://doaj.org/toc/1662-5099

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Mapping axon initial segment structure and function by multiplexed proximity biotinylation

Authors: Hamdan Hamdan, Brian C. Lim, Tomohiro Torii, Abhijeet Joshi, Matthias Konning, Cameron Smith, Donna J. Palmer, Philip Ng, Christophe Leterrier, Juan A. Oses-Prieto, Alma L. Burlingame, Matthew N. Rasband

Source: Nature Communications, Vol 11, Iss 1, Pp 1-17 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/d8484c89fd574851bf45654f19bac800

Phosphoregulation of the oncogenic protein regulator of cytokinesis 1 (PRC1) by the atypical CDK16/CCNY complex

Authors: Sara Hernández-Ortega, Abril Sánchez-Botet, Eva Quandt, Núria Masip, Laura Gasa, Gaetano Verde, Javier Jiménez, Rebecca S. Levin, Florentine U. Rutaganira, Alma L. Burlingame, Don Wolfgeher, Mariana P. C. Ribeiro, Stephen J. Kron, Kevan M. Shokat, Josep Clotet

Source: Experimental and Molecular Medicine, Vol 51, Iss 4, Pp 1-17 (2019)

Subject Terms: Medicine, Biochemistry, QD415-436

File Description: electronic resource

Relation: https://doaj.org/toc/1226-3613; https://doaj.org/toc/2092-6413

Access URL: https://doaj.org/article/1dcd687f68334e9fa27d9b82540c2994

Working toward reducing bias in peer review

Authors: Kerry-Anne Rye, Nicholas O. Davidson, Alma L. Burlingame, F. Peter Guengerich

Source: Journal of Lipid Research, Vol 62, Iss , Pp 100124- (2021)

Subject Terms: Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022227521001061; https://doaj.org/toc/0022-2275

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The lineage stability and suppressive program of regulatory T cells require protein O-GlcNAcylation

Authors: Bing Liu, Oscar C. Salgado, Sangya Singh, Keli L. Hippen, Jason C. Maynard, Alma L. Burlingame, Lauren E. Ball, Bruce R. Blazar, Michael A. Farrar, Kristin A. Hogquist, Hai-Bin Ruan

Source: Nature Communications, Vol 10, Iss 1, Pp 1-13 (2019)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/753e12c8c75848d7bf15336570926002

Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling

Authors: James E. Longbotham, Cynthia M. Chio, Venkatasubramanian Dharmarajan, Michael J. Trnka, Idelisse Ortiz Torres, Devrishi Goswami, Karen Ruiz, Alma L. Burlingame, Patrick R. Griffin, Danica Galonić Fujimori

Source: Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/8af366d414d64557aaf7cda67d5a31e7

The data must be accessible to all

Authors: Lila M. Gierasch, Nicholas O. Davidson, Kerry-Anne Rye, Alma L. Burlingame

Source: Journal of Lipid Research, Vol 61, Iss 4, Pp 465- (2020)

Subject Terms: Biochemistry, QD415-436

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Relation: http://www.sciencedirect.com/science/article/pii/S0022227520434959; https://doaj.org/toc/0022-2275

Access URL: https://doaj.org/article/0e219db6e3694c8295d71695e67d471f

Axonal G3BP1 stress granule protein limits axonal mRNA translation and nerve regeneration

Authors: Pabitra K. Sahoo, Seung Joon Lee, Poonam B. Jaiswal, Stefanie Alber, Amar N. Kar, Sharmina Miller-Randolph, Elizabeth E. Taylor, Terika Smith, Bhagat Singh, Tammy Szu-Yu Ho, Anatoly Urisman, Shreya Chand, Edsel A. Pena, Alma L. Burlingame, Clifford J. Woolf, Mike Fainzilber, Arthur W. English, Jeffery L. Twiss

Source: Nature Communications, Vol 9, Iss 1, Pp 1-14 (2018)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

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Peripheral Elevation of a Klotho Fragment Enhances Brain Function and Resilience in Young, Aging, and α-Synuclein Transgenic Mice

Authors: Julio Leon, Arturo J. Moreno, Bayardo I. Garay, Robert J. Chalkley, Alma L. Burlingame, Dan Wang, Dena B. Dubal

Source: Cell Reports, Vol 20, Iss 6, Pp 1360-1371 (2017)

Subject Terms: klotho, brain, cognition, motor function, aging, Alzheimer disease, Parkinson disease, α-synuclein, mice, NMDA receptors, Biology (General), QH301-705.5

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Relation: http://www.sciencedirect.com/science/article/pii/S2211124717309907; https://doaj.org/toc/2211-1247

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Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones

Authors: Coral Y. Zhou, Caitlin I. Stoddard, Jonathan B. Johnston, Michael J. Trnka, Ignacia Echeverria, Eugene Palovcak, Andrej Sali, Alma L. Burlingame, Yifan Cheng, Geeta J. Narlikar

Source: Cell Reports, Vol 19, Iss 10, Pp 2033-2044 (2017)

Subject Terms: Rvb1, Rvb2, RuvBL1, RuvBL2, pontin, reptin, chaperone, AAA+ ATPase, INO80, chromatin remodeling, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221112471730671X; https://doaj.org/toc/2211-1247

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PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3

Authors: Weimin Ni, Shou-Ling Xu, Eduardo González-Grandío, Robert J. Chalkley, Andreas F. R. Huhmer, Alma L. Burlingame, Zhi-Yong Wang, Peter H. Quail

Source: Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/50a39e843cd2464a9bc2bed95a986aee

Opening ASBMB publications freely to all

Authors: Lila M. Gierasch, Nicholas O. Davidson, Kerry-Anne Rye, Alma L. Burlingame

Source: Journal of Lipid Research, Vol 61, Iss 7, Pp 969-970 (2020)

Subject Terms: Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022227520435746; https://doaj.org/toc/0022-2275

Access URL: https://doaj.org/article/57775e5fa3d74dfa9875d8ac19f1db17