Predictors of Salmonella enterica contamination in agricultural and livestock-impacted natural watersheds

Authors: Rocha, Alan D.L. ^a, Lima, Laiorayne A. ^a, Sales, Gustavo F.C. ^a, Silva, Nadyra J. ^a, Gomes, Maria L.R. ^a, Pereira, Walter E. ^b, Givisiez, Patrícia E.N. ^a, Brown, Eric W. ^c, Allard, Marc W. ^c, Bell, Rebecca L. ^c, Toro, Magaly ^{d, e}, Meng, Jianghong ^{e, f}, Oliveira, Celso José Bruno de ^{a, ⁎}

Source: In Environmental Pollution 15 April 2025 371

Phylogenetic relationship and genomic characterization of Salmonella Typhimurium strains isolated from swine in Brazil

Authors: Seribelli, Amanda Aparecida, da Silva, Patrick, Frazão, Miliane Rodrigues, Kich, Jalusa Deon, Allard, Marc W., Falcão, Juliana Pfrimer

Source: In Infection, Genetics and Evolution September 2021 93

Genomic Surveillance of Foodborne Pathogens: Advances and Obstacles.

Authors: Gensheimer, Kathleen, Allard, Marc W., Timme, Ruth E., Brown, Eric, Hintz, Leslie, Pettengill, Jamie, Strain, Errol, Tallent, Sandra M., Vélez, Lili F., King, Ewa, Shea, Sharon L.

Source: Journal of Public Health Management & Practice; May/Jun2025, Vol. 31 Issue 3, p351-359, 9p

Food Safety Genomics and Connections to One Health and the Clinical Microbiology Laboratory

Authors: Allard, Marc W., Zheng, Jie, Cao, Guojie, Timme, Ruth, Stevens, Eric, Brown, Eric W.

Source: In Clinics in Laboratory Medicine December 2020 40(4):553-563

Antimicrobial resistance and related gene analysis of Salmonella from egg and chicken sources by whole-genome sequencing

Authors: Hu, Lijun, Cao, Guojie, Brown, Eric W., Allard, Marc W., Ma, Li M., Khan, Ashraf A., Zhang, Guodong

Source: In Poultry Science December 2020 99(12):7076-7083

Whole genome sequencing uses for foodborne contamination and compliance: Discovery of an emerging contamination event in an ice cream facility using whole genome sequencing

Authors: Allard, Marc W., Strain, Errol, Rand, Hugh, Melka, David, Correll, William A., Hintz, Leslie, Stevens, Eric, Timme, Ruth, Lomonaco, Sara, Chen, Yi, Musser, Steven M., Brown, Eric W.

Source: In Infection, Genetics and Evolution September 2019 73:214-220

Genomics‐based re‐examination of the taxonomy and phylogeny of human and simian Mastadenoviruses: an evolving whole genomes approach, revealing putative zoonosis, anthroponosis, and amphizoonosis

Authors: Kang, June, Ismail, Ashrafali Mohamed, Dehghan, Shoaleh, Rajaiya, Jaya, Allard, Marc W., Lim, Haw Chuan, Dyer, David W., Chodosh, James, Seto, Donald

Source: Cladistics. 36(4):358-373

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107439385.0x000001&indx=1&recIds=ETOCvdc_100107439385.0x000001

Phylogenetic analysis revealed that Salmonella Typhimurium ST313 isolated from humans and food in Brazil presented a high genomic similarity

Authors: Seribelli, Amanda Ap., Gonzales, Júlia C., de Almeida, Fernanda, Benevides, Leandro, Cazentini Medeiros, Marta I., dos Prazeres Rodrigues, Dália, de C. Soares, Siomar, Allard, Marc W., Falcão, Juliana P.

Source: Brazilian journal of microbiology. 51(1):53-64

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100173611476.0x000001&indx=1&recIds=ETOCvdc_100173611476.0x000001

Characterization of Salmonella enterica Isolates from Selected U.S. Swine Feed Mills by Whole-Genome Sequencing

Authors: Trinetta, Valentina, Magossi, Gabriela, Allard, Marc W., Tallent, Sandra M., Brown, Eric W., Lomonaco, Sara

Source: Foodborne pathogens and disease. 17(2):126-136

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100098724527.0x000001&indx=1&recIds=ETOCvdc_100098724527.0x000001

DNA sequences and predicted protein structures of prot6E and sefA genes for Salmonella ser. Enteritidis detection

Authors: Hu, Lijun, Stones, Robert, Brown, Eric W., Allard, Marc W., Ma, Li M., Zhang, Guodong

Source: In Food Control February 2019 96:271-280

Genomics of foodborne pathogens for microbial food safety

Authors: Allard, Marc W, Bell, Rebecca, Ferreira, Christina M, Gonzalez-Escalona, Narjol, Hoffmann, Maria, Muruvanda, Tim, Ottesen, Andrea, Ramachandran, Padmini, Reed, Elizabeth, Sharma, Shashi, Stevens, Eric, Timme, Ruth, Zheng, Jie, Brown, Eric W

Source: In Current Opinion in Biotechnology February 2018 49:224-229

In‐depth comparative analysis of Illumina® MiSeq run metrics: Development of a wet‐lab quality assessment tool

Authors: Kastanis, George John, Santana‐Quintero, Luis V., Sanchez‐Leon, Maria, Lomonaco, Sara, Brown, Eric W., Allard, Marc W.

Source: Molecular ecology resources. 19(2):377-387

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100090620055.0x000001&indx=1&recIds=ETOCvdc_100090620055.0x000001

Utilizing the Public GenomeTrakr Database for Foodborne Pathogen Traceback

Authors: Timme, Ruth E., Leon, Maria Sanchez, Allard, Marc W.

Source: Methods in molecular biology. 1918:201-212

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN618869840&indx=1&recIds=ETOCRN618869840

The use of next generation sequencing for improving food safety: Translation into practice

Authors: Jagadeesan, Balamurugan, Gerner-Smidt, Peter, Allard, Marc W., Leuillet, Sébastien, Winkler, Anett, Xiao, Yinghua, Chaffron, Samuel, Van Der Vossen, Jos, Tang, Silin, Katase, Mitsuru, McClure, Peter, Kimura, Bon, Ching Chai, Lay, Chapman, John, Grant, Kathie

Source: Food microbiology. 79:96-115

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100075523217.0x000001&indx=1&recIds=ETOCvdc_100075523217.0x000001

Genomic surveillance links livestock production with the emergence and spread of multi-drug resistant non-typhoidal Salmonella in Mexico

Authors: Delgado-Suárez, Enrique Jesús, Ortíz-López, Rocío, Gebreyes, Wondwossen A., Allard, Marc W., Barona-Gómez, Francisco, Rubio-Lozano, María Salud

Source: Journal of microbiology. 57(4):271-280

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161666987.0x000001&indx=1&recIds=ETOCvdc_100161666987.0x000001

A Simple Test: Evaluating Explanations for the Relative Simplicity of the Edwardsiidae (Cnidaria: Anthozoa)

Authors: Daly, Marymegan, Lipscomb, Diana L., Allard, Marc W.

Source: Evolution, 2002 Mar 01. 56(3), 502-510.

Access URL: https://www.jstor.org/stable/3061588

Comparative genomics reveals high genetic similarity among strains of Salmonella enterica serovar Infantis isolated from multiple sources in Brazil.

Authors: Vilela, Felipe P., Felice, Andrei G., Seribelli, Amanda A., Rodrigues, Dália P., Soares, Siomar C., Allard, Marc W., Falcão, Juliana P.

Source: PeerJ; May2024, p1-26, 26p

Subject Terms: SALMONELLA enterica, COMPARATIVE genomics, GENOMICS, WHOLE genome sequencing, PAN-genome, FOOD pathogens

Geographic Terms: BRAZIL

Molecular characterization of Salmonella Typhimurium isolated in Brazil by CRISPR-MVLST

Authors: Almeida, Fernanda, Medeiros, Marta Inês Cazentini, Rodrigues, Dália dos Prazeres, Allard, Marc W., Falcão, Juliana Pfrimer

Source: In Journal of Microbiological Methods February 2017 133:55-61

Epidemiology needs more interdisciplinary teams with expertise in molecular systematics, public health and food safety

Authors: Allard, Marc W., Brown, Eric W.

Source: Cladistics. 36(4):345-347

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107439416.0x000001&indx=1&recIds=ETOCvdc_100107439416.0x000001

Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States

Authors: Hoffmann, Maria, Luo, Yan, Monday, Steven R., Gonzalez-Escalona, Narjol, Ottesen, Andrea R., Muruvanda, Tim, Wang, Charles, Kastanis, George, Keys, Christine, Janies, Daniel, Senturk, Izzet F., Catalyurek, Umit V., Wang, Hua, Hammack, Thomas S., Wolfgang, William J., Schoonmaker-Bopp, Dianna, Chu, Alvina, Myers, Robert, Haendiges, Julie, Evans, Peter S., Meng, Jianghong, Strain, Errol A., Allard, Marc W., Brown, Eric W.

Source: The Journal of Infectious Diseases, 2016 Feb . 213(4), 502-508.

Access URL: http://www.jstor.org/stable/24716420