Mobilization of an ICEclc-Like Element as a Potential Mechanism for the Spread of IMP-13 Carbapenemase in Pseudomonas aeruginosa

Authors: Léa Bientz, Ulysse Guyet, Jennifer Guiraud, Mathieu Metifiot, Mikeldi Moulieras, Sabine Aillerie, Laure Coulange-Mayonnove, Bachir Boureima-Abdou, Alexis Groppi, Macha Nikolski, Cécile Bébéar, Sabine Pereyre, Véronique Dubois

Source: Journal of Global Antimicrobial Resistance, Vol 41, Iss , Pp 44-51 (2025)

Subject Terms: Pseudomonas aeruginosa, IMP-13 carbapenemase, ICEclc-like element, Horizontal gene transfer, Antibiotic resistance, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221371652400465X; https://doaj.org/toc/2213-7165

Access URL: https://doaj.org/article/312c1e80afbd4cbdb7321c4c7a578ac6

Holistic understanding of trimethoprim resistance in Streptococcus pneumoniae using an integrative approach of genome-wide association study, resistance reconstruction, and machine learning

Authors: Nguyen-Phuong Pham, Hélène Gingras, Chantal Godin, Jie Feng, Alexis Groppi, Macha Nikolski, Philippe Leprohon, Marc Ouellette

Source: mBio, Vol 15, Iss 9 (2024)

Subject Terms: Streptococcus pneumoniae, trimethoprim, drug resistance mechanisms, genome-wide association study, machine learning, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/44c6752608aa4c789646fae353036bbc

Population genomics of apricots unravels domestication history and adaptive events

Authors: Alexis Groppi, Shuo Liu, Amandine Cornille, Stéphane Decroocq, Quynh Trang Bui, David Tricon, Corinne Cruaud, Sandrine Arribat, Caroline Belser, William Marande, Jérôme Salse, Cécile Huneau, Nathalie Rodde, Wassim Rhalloussi, Stéphane Cauet, Benjamin Istace, Erwan Denis, Sébastien Carrère, Jean-Marc Audergon, Guillaume Roch, Patrick Lambert, Tetyana Zhebentyayeva, Wei-Sheng Liu, Olivier Bouchez, Céline Lopez-Roques, Rémy-Félix Serre, Robert Debuchy, Joseph Tran, Patrick Wincker, Xilong Chen, Pierre Pétriacq, Aurélien Barre, Macha Nikolski, Jean-Marc Aury, Albert Glenn Abbott, Tatiana Giraud, Véronique Decroocq

Source: Nature Communications, Vol 12, Iss 1, Pp 1-16 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/0104f159129445f597c4927ff812917d

Novel analytical methods to interpret large sequencing data from small sample sizes

Authors: Florence Lichou, Sébastien Orazio, Stéphanie Dulucq, Gabriel Etienne, Michel Longy, Christophe Hubert, Alexis Groppi, Alain Monnereau, François-Xavier Mahon, Béatrice Turcq

Source: Human Genomics, Vol 13, Iss 1, Pp 1-11 (2019)

Subject Terms: Chronic myeloid leukemia, Next-generation sequencing, Pharmacogenetics, Small sample size, Statistics, Factorial correspondence analysis, Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40246-019-0235-1; https://doaj.org/toc/1479-7364

Access URL: https://doaj.org/article/afaf3dfcb3be4dcbb71a9c322a47951a

Targeting CAMKK2 and SOC Channels as a Novel Therapeutic Approach for Sensitizing Acute Promyelocytic Leukemia Cells to All-Trans Retinoic Acid

Authors: Faten Merhi, Karla Alvarez-Valadez, Jenifer Trepiana, Claire Lescoat, Alexis Groppi, Jean-William Dupuy, Pierre Soubeyran, Guido Kroemer, Pierre Vacher, Mojgan Djavaheri-Mergny

Source: Cells, Vol 10, Iss 12, p 3364 (2021)

Subject Terms: differentiation, cell death, autophagy, cancer, ORAI1, STIM1, Cytology, QH573-671

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4409/10/12/3364; https://doaj.org/toc/2073-4409

Access URL: https://doaj.org/article/176368e73312476792edf20a92c76fa8

Pacific Biosciences Sequencing and IMGT/HighV-QUEST Analysis of Full-Length Single Chain Fragment Variable from an In Vivo Selected Phage-Display Combinatorial Library

Authors: Audrey Hemadou, Véronique Giudicelli, Melissa Laird Smith, Marie-Paule Lefranc, Patrice Duroux, Sofia Kossida, Cheryl Heiner, N. Lance Hepler, John Kuijpers, Alexis Groppi, Jonas Korlach, Philippe Mondon, Florence Ottones, Marie-Josée Jacobin-Valat, Jeanny Laroche-Traineau, Gisèle Clofent-Sanchez

Source: Frontiers in Immunology, Vol 8 (2017)

Subject Terms: human antibody, IMGT/HighV-QUEST, immunoinformatics, immunoglobulin, Pacific Biosciences sequencing, phage combinatorial library, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fimmu.2017.01796/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/9295a62022e7429ca9a82b81567e8178

Early Medieval Muslim Graves in France: First Archaeological, Anthropological and Palaeogenomic Evidence.

Authors: Yves Gleize, Fanny Mendisco, Marie-Hélène Pemonge, Christophe Hubert, Alexis Groppi, Bertrand Houix, Marie-France Deguilloux, Jean-Yves Breuil

Source: PLoS ONE, Vol 11, Iss 2, p e0148583 (2016)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4765927?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/67c9635d231247f2840cea200f05f567

Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures.

Authors: Senta Heiss-Blanquet, Françoise Fayolle-Guichard, Vincent Lombard, Agnès Hébert, Pedro M Coutinho, Alexis Groppi, Aurélien Barre, Bernard Henrissat

Source: PLoS ONE, Vol 11, Iss 12, p e0167216 (2016)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5147896?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/42c5d9d656b6485aa190037bd0f7fc37