Deep mining of the Sequence Read Archive reveals major genetic innovations in coronaviruses and other nidoviruses of aquatic vertebrates.

Authors: Chris Lauber, Xiaoyu Zhang, Josef Vaas, Franziska Klingler, Pascal Mutz, Arseny Dubin, Thomas Pietschmann, Olivia Roth, Benjamin W Neuman, Alexander E Gorbalenya, Ralf Bartenschlager, Stefan Seitz

Source: PLoS Pathogens, Vol 20, Iss 4, p e1012163 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1012163&type=printable; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/d84e98e452c042e5b5e193235d7e40a8

What's what in a pandemic? Virus, disease, and societal disaster must be differentiated.

Authors: Alexander E Gorbalenya, Stanley Perlman

Source: PLoS Biology, Vol 21, Iss 5, p e3002130 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/00f78ee6e1d54aeabf411a223929a244

Recognizing species as a new focus of virus research.

Authors: Alexander E Gorbalenya, Stuart G Siddell

Source: PLoS Pathogens, Vol 17, Iss 3, p e1009318 (2021)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/b8e1914db5b046309acea9afd3f81e0d

A planarian nidovirus expands the limits of RNA genome size.

Authors: Amir Saberi, Anastasia A Gulyaeva, John L Brubacher, Phillip A Newmark, Alexander E Gorbalenya

Source: PLoS Pathogens, Vol 14, Iss 11, p e1007314 (2018)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC6211748?pdf=render; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/8e6799ff2957418e89027d02e3735803

Modulation of the Host Lipid Landscape to Promote RNA Virus Replication: The Picornavirus Encephalomyocarditis Virus Converges on the Pathway Used by Hepatitis C Virus.

Authors: Cristina M Dorobantu, Lucian Albulescu, Christian Harak, Qian Feng, Mirjam van Kampen, Jeroen R P M Strating, Alexander E Gorbalenya, Volker Lohmann, Hilde M van der Schaar, Frank J M van Kuppeveld

Source: PLoS Pathogens, Vol 11, Iss 9, p e1005185 (2015)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4583462?pdf=render; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/9cd403359eff4377b3824bc5b774fca6

The footprint of genome architecture in the largest genome expansion in RNA viruses.

Authors: Chris Lauber, Jelle J Goeman, Maria del Carmen Parquet, Phan Thi Nga, Eric J Snijder, Kouichi Morita, Alexander E Gorbalenya

Source: PLoS Pathogens, Vol 9, Iss 7, p e1003500 (2013)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23874204/?tool=EBI; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/ffe37aa6492648b288f00d6c33ddf777

Discovery of the first insect nidovirus, a missing evolutionary link in the emergence of the largest RNA virus genomes.

Authors: Phan Thi Nga, Maria del Carmen Parquet, Chris Lauber, Manmohan Parida, Takeshi Nabeshima, Fuxun Yu, Nguyen Thanh Thuy, Shingo Inoue, Takashi Ito, Kenta Okamoto, Akitoyo Ichinose, Eric J Snijder, Kouichi Morita, Alexander E Gorbalenya

Source: PLoS Pathogens, Vol 7, Iss 9, p e1002215 (2011)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21931546/pdf/?tool=EBI; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/51cf373c60954767a980f57a00189867

Discovery of a new human polyomavirus associated with trichodysplasia spinulosa in an immunocompromized patient.

Authors: Els van der Meijden, René W A Janssens, Chris Lauber, Jan Nico Bouwes Bavinck, Alexander E Gorbalenya, Mariet C W Feltkamp

Source: PLoS Pathogens, Vol 6, Iss 7, p e1001024 (2010)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20686659/?tool=EBI; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/b755d805c3734ffd8835e612aa56993e

Arterivirus Nsp1 modulates the accumulation of minus-strand templates to control the relative abundance of viral mRNAs.

Authors: Danny D Nedialkova, Alexander E Gorbalenya, Eric J Snijder

Source: PLoS Pathogens, Vol 6, Iss 2, p e1000772 (2010)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2824749?pdf=render; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/6115fb2e2de84a21bed5c299bed5434e

SARS-coronavirus replication/transcription complexes are membrane-protected and need a host factor for activity in vitro.

Authors: Martijn J van Hemert, Sjoerd H E van den Worm, Kèvin Knoops, A Mieke Mommaas, Alexander E Gorbalenya, Eric J Snijder

Source: PLoS Pathogens, Vol 4, Iss 5, p e1000054 (2008)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2322833?pdf=render; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/fe76de85d7d34746a461cbbf727e6ec7

PLOS Pathogens expanding horizons

Authors: Julia Squarr, Rebecca Kirk, Alexander E. Gorbalenya, Michael Malim

Source: PLoS Pathogens, Vol 20, Iss 6 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11175460/?tool=EBI; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/4c2bb4cba79741b1938c26dbbc77802d

What’s what in a pandemic? Virus, disease, and societal disaster must be differentiated

Authors: Alexander E. Gorbalenya, Stanley Perlman

Source: PLoS Biology, Vol 21, Iss 5 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10212159/?tool=EBI; https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/c89b14579ea74db8a6be0fdd46d8121a

N7-Methylation of the Coronavirus RNA Cap Is Required for Maximal Virulence by Preventing Innate Immune Recognition

Authors: Ruangang Pan, Eveline Kindler, Liu Cao, Yu Zhou, Zhen Zhang, Qianyun Liu, Nadine Ebert, Roland Züst, Ying Sun, Alexander E. Gorbalenya, Stanley Perlman, Volker Thiel, Yu Chen, Deyin Guo

Source: mBio, Vol 13, Iss 1 (2022)

Subject Terms: coronavirus, nonstructural protein 14 (nsp14), RNA cap structure, N7-methylation, type I interferon, SARS-CoV-2, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/841cb6336f9f44e5a3a759faac211544

Translating genomic exploration of the family Polyomaviridae into confident human polyomavirus detection

Authors: Sergio Kamminga, Igor A. Sidorov, Michaël Tadesse, Els van der Meijden, Caroline de Brouwer, Hans L. Zaaijer, Mariet C.W. Feltkamp, Alexander E. Gorbalenya

Source: iScience, Vol 25, Iss 1, Pp 103613- (2022)

Subject Terms: Virology, Omics, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004221015832; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/932258dc4c664ae5aa9c70026dfc720e

Mutations in Encephalomyocarditis Virus 3A Protein Uncouple the Dependency of Genome Replication on Host Factors Phosphatidylinositol 4-Kinase IIIα and Oxysterol-Binding Protein

Authors: Cristina M. Dorobantu, Lucian Albulescu, Heyrhyoung Lyoo, Mirjam van Kampen, Raffaele De Francesco, Volker Lohmann, Christian Harak, Hilde M. van der Schaar, Jeroen R. P. M. Strating, Alexander E. Gorbalenya, Frank J. M. van Kuppeveld

Source: mSphere, Vol 1, Iss 3 (2016)

Subject Terms: EMCV, OSBP, PI4KA, PI4P, cholesterol, mutants, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/95a6ee69959a49289b7cdb53a02feac5

Genetics-Based Classification of Filoviruses Calls for Expanded Sampling of Genomic Sequences

Authors: Alexander E. Gorbalenya, Chris Lauber

Source: Viruses, Vol 4, Iss 9, Pp 1425-1437 (2012)

Subject Terms: genetics-based classification, taxonomy, DEmARC, filoviruses, ebolavirus, virus species, genetic diversity, pairwise evolutionary distances, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.mdpi.com/1999-4915/4/9/1425; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/89431a0ff5bb47d8ac23eb987cbab1d8

Genomic Characterization of a Newly Discovered Coronavirus Associated with Acute Respiratory Distress Syndrome in Humans

Authors: Sander van Boheemen, Miranda de Graaf, Chris Lauber, Theo M. Bestebroer, V. Stalin Raj, Ali Moh Zaki, Albert D. M. E. Osterhaus, Bart L. Haagmans, Alexander E. Gorbalenya, Eric J. Snijder, Ron A. M. Fouchier

Source: mBio, Vol 3, Iss 6 (2012)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/343f6080f80c49178f07466abfa9639e