Comparative metagenomic analysis from Sundarbans ecosystems advances our understanding of microbial communities and their functional roles

Authors: Basanta Kumar Das, Hirak Jyoti Chakraborty, Vikash Kumar, Ajaya Kumar Rout, Biswanath Patra, Sanjoy Kumar Das, Bijay Kumar Behera

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-14 (2024)

Subject Terms: Sundarbans, Metagenomics, Microbial communities, Probiotics, Bioremediation, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/df58c933f3254022800a69f5ad66136f

Whole genome sequence analysis of shallot virus X from India reveals it to be a natural recombinant with positive selection pressure

Authors: Jyoti Singh, Sachin Teotia, Ajay Kumar Singh, Meenakshi Arya, Ajaya Kumar Rout, Bijay Kumar Behera, Shahana Majumder

Source: BMC Genomic Data, Vol 25, Iss 1, Pp 1-9 (2024)

Subject Terms: Shallot virus X, Next generation sequencing, Recombination, Positive selection, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6844

Access URL: https://doaj.org/article/de252e7228404a2da8fac3fc159c7db6

Evaluation of biocontrol efficacy of rhizosphere dwelling bacteria for management of Fusarium wilt and Botrytis gray mold of chickpea

Authors: Gurreddi Bhargavi, Meenakshi Arya, Prashant Prakash Jambhulkar, Anshuman Singh, Ajaya Kumar Rout, Bijay Kumar Behera, Sushil Kumar Chaturvedi, Ashok Kumar Singh

Source: BMC Genomic Data, Vol 25, Iss 1, Pp 1-16 (2024)

Subject Terms: Chickpea, Fusarium wilt, Botrytis Gray Mold, Rhizosphere, Bioagents, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6844

Access URL: https://doaj.org/article/36292304fb4e4fec966db97d792393d7

Assessment of Genetic Diversity and the Population Structure of Species from the Fusarium fujikuroi Species Complex Causing Fusarium Stalk Rot of Maize

Authors: Prashant P. Jambhulkar, Ruchira Bajpai, Harish Jayarama Reddy, Partha Sarathi Tripathy, Priyanka Varun, Ajaya Kumar Rout, Bijay Kumar Behera, Dilip K. Lakshman, Mallikarjuna Nanjundappa

Source: Journal of Fungi, Vol 10, Iss 8, p 574 (2024)

Subject Terms: FSR, Fusarium, haplotypes, DNA polymorphism, genetic diversity, maize, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2309-608X/10/8/574; https://doaj.org/toc/2309-608X

Access URL: https://doaj.org/article/0bb212b81677466ca45027d950fd99c2

Transcriptome profiling of Nile tilapia (Oreochromis niloticus) identifies candidate genes in response to riverine pollution

Authors: Bijay Kumar Behera, Chirasmita Nayak, Ajaya Kumar Rout, Smruti Priyambada Pradhan, Pranaya Kumar Parida, Dhruba Jyoti Sarkar, Basanta Kumar Das, Anil Rai

Source: Current Research in Biotechnology, Vol 7, Iss , Pp 100180- (2024)

Subject Terms: Transcriptome, Nile tilapia, RNS-seq, Liver, river Ganga, Pollution, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590262824000066; https://doaj.org/toc/2590-2628

Access URL: https://doaj.org/article/451faae710764e158c8ba4c4e965a214

Metagenomics analysis of sediments of river Ganga, India for bacterial diversity, functional genomics, antibiotic resistant genes and virulence factors

Authors: Ajaya Kumar Rout, Partha Sarathi Tripathy, Sangita Dixit, Dibyajyoti Uttameswar Behera, Bhaskar Behera, Basanta Kumar Das, Bijay Kumar Behera

Source: Current Research in Biotechnology, Vol 7, Iss , Pp 100187- (2024)

Subject Terms: Metagenomics, Microbial communities, River sediments, Antibiotic resistant genes, Virulence factors, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590262824000133; https://doaj.org/toc/2590-2628

Access URL: https://doaj.org/article/ee015b5587074fa1a95183fb75f937ab

Unveiling the plastic degrading potential of the beneficial microbiome through plastisphere community diversity and predictive functionality analysis in waste disposal sites in the adjoining areas of Kolkata, West Bengal, India

Authors: Sujata Dey, Ajaya Kumar Rout, Koushik Ghosh, Sangita Dixit, Vikash Kumar, Basanta Kumar Das, Bijay Kumar Behera

Source: Current Research in Biotechnology, Vol 8, Iss , Pp 100237- (2024)

Subject Terms: Plastic waste, Plastisphere, Beneficial microbiome, Plastic degrading enzymes, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590262824000637; https://doaj.org/toc/2590-2628

Access URL: https://doaj.org/article/5326671ca8314a1580fde1494d422bb1

Plastisphere community assemblage of aquatic environment: plastic-microbe interaction, role in degradation and characterization technologies

Authors: Sujata Dey, Ajaya Kumar Rout, Bijay Kumar Behera, Koushik Ghosh

Source: Environmental Microbiome, Vol 17, Iss 1, Pp 1-21 (2022)

Subject Terms: Plastisphere, Biofilm assemblage, Plastic-microbe interaction, Plastic degrading microbes, Plastisphere characterization, Environmental sciences, GE1-350, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2524-6372

Access URL: https://doaj.org/article/cb32f1954bfe4729985894cc01ffd255

Unveiling the Microbiome Landscape: A Metagenomic Study of Bacterial Diversity, Antibiotic Resistance, and Virulence Factors in the Sediments of the River Ganga, India

Authors: Ajaya Kumar Rout, Partha Sarathi Tripathy, Sangita Dixit, Dibyajyoti Uttameswar Behera, Bhaskar Behera, Basanta Kumar Das, Bijay Kumar Behera

Source: Antibiotics, Vol 12, Iss 12, p 1735 (2023)

Subject Terms: metagenomics, diversity, ganga, sediment, AMR, virulence factors, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/12/12/1735; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/ec228fe515b14924836b19a6da7b35ea

Structural insights into the RNA interaction with Yam bean Mosaic virus (coat protein) from Pachyrhizus erosus using bioinformatics approach.

Authors: Varsha Acharya, R Arutselvan, Kalidas Pati, Ajaya Kumar Rout, Budheswar Dehury, V B S Chauhan, M Nedunchezhiyan

Source: PLoS ONE, Vol 17, Iss 7, p e0270534 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0270534&type=printable; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/8de83cb2314a42c08923f8f5634340b3

Insights into structure and dynamics of extracellular domain of Toll-like receptor 5 in Cirrhinus mrigala (mrigala): A molecular dynamics simulation approach.

Authors: Ajaya Kumar Rout, Varsha Acharya, Diptimayee Maharana, Budheswar Dehury, Sheela Rani Udgata, Rajkumar Jena, Bhaskar Behera, Pranaya Kumar Parida, Bijay Kumar Behera

Source: PLoS ONE, Vol 16, Iss 1, p e0245358 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0245358&type=printable; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/a8716c493a864f9caa0500a3fb31aff6

Metagenomic Analysis Reveals Bacterial and Fungal Diversity and Their Bioremediation Potential From Sediments of River Ganga and Yamuna in India

Authors: Bijay Kumar Behera, Hirak Jyoti Chakraborty, Biswanath Patra, Ajaya Kumar Rout, Budheswar Dehury, Basanta Kumar Das, Dhruba Jyoti Sarkar, Pranaya Kumar Parida, Rohan Kumar Raman, Atmakuri Ramakrishna Rao, Anil Rai, Trilochan Mohapatra

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: metagenomics, Ganga, Yamuna, river sediment, bioremediation, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.556136/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/25f265596dae40b0828fe8cb2b52c27a

Metagenome analysis from the sediment of river Ganga and Yamuna: In search of beneficial microbiome.

Authors: Bijay Kumar Behera, Biswanath Patra, Hirak Jyoti Chakraborty, Parameswar Sahu, Ajaya Kumar Rout, Dhruba Jyoti Sarkar, Pranaya Kumar Parida, Rohan Kumar Raman, Atmakuri Ramakrishna Rao, Anil Rai, Basanta Kumar Das, Joykrushna Jena, Trilochan Mohapatra

Source: PLoS ONE, Vol 15, Iss 10, p e0239594 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/28f5bde3661949e9b0b051abc05aade3

The complete mitochondrial genome sequence of Osteobrama belangeri (Cyprinidae) and its comparison with other related Cypriniformes fish species

Authors: Bijay Kumar Behera, Ajaya Kumar Rout, Vishwamitra Singh Baisvar, Prasenjit Paria, Nandeibam Samarjit Singh, Sanjeev Sen Ghadei, Asim Kumar Jana, Pranaya Kumar Parida, Basanta Kumar Das

Source: Mitochondrial DNA. Part B. Resources, Vol 4, Iss 2, Pp 2330-2331 (2019)

Subject Terms: next-generation sequencing, mitogenome, o. belangeri, phylogenetic tree, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/a8255f579aa64a22994224475798c82e

Identification of Potential MHC Class-II-Restricted Epitopes Derived from Leishmania donovani Antigens by Reverse Vaccinology and Evaluation of Their CD4+ T-Cell Responsiveness against Visceral Leishmaniasis

Authors: Manas Ranjan Dikhit, Akhilesh Kumar, Sushmita Das, Budheswar Dehury, Ajaya Kumar Rout, Fauzia Jamal, Ganesh Chandra Sahoo, Roshan Kamal Topno, Krishna Pandey, V. N. R. Das, Sanjiva Bimal, Pradeep Das

Source: Frontiers in Immunology, Vol 8 (2017)

Subject Terms: Leishmania, CD4 epitope, immunoinformatics, visceral leishmaniasis, IFN-γ, vaccine, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fimmu.2017.01763/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/4ebb67fd179142a788b91d4162923c03