Towards unified reporting of genome sequencing results in clinical microbiology

Authors: Eugenio Mutschler, Tim Roloff, Aitana Neves, Hege Vangstein Aamot, Belén Rodriguez-Sanchez, Mario Ramirez, John Rossen, Natacha Couto, Ângela Novais, Benjamin P. Howden, Sylvain Brisse, Sandra Reuter, Oliver Nolte, Adrian Egli, Helena M. B. Seth-Smith, the ESCMID Study Group for Epidemiological Markers (ESGEM), and ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD)

Source: PeerJ, Vol 12, p e17673 (2024)

Subject Terms: Genome sequencing, NGS, Surveillance, WGS, Diagnostics, Treatment, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/17673.pdf; https://peerj.com/articles/17673/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/8f632ea24ca34cd8832476c1cd0c394d

How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort

Authors: Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L. Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli

Source: Microbiology Spectrum, Vol 12, Iss 5 (2024)

Subject Terms: SARS-CoV-2, surveillance studies, genomic surveillance, whole genome sequencing, modeling, molecular epidemiology, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/c4ccaa18016f452ba4419207aed44b4b

FAIR+E pathogen data for surveillance and research: lessons from COVID-19

Authors: Aitana Neves, Isabel Cuesta, Erik Hjerde, Terje Klemetsen, David Salgado, Jacques van Helden, Nadim Rahman, Nazeefa Fatima, Nestoras Karathanasis, Pawel Zmora, Wolmar Nyberg Åkerström, Sushma Nagaraja Grellscheid, Zahra Waheed, Niklas Blomberg

Source: Frontiers in Public Health, Vol 11 (2023)

Subject Terms: data sharing and re-use, FAIR (Findable Accessible Interoperable and Reusable) principles, equity, COVID-19, surveillance, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpubh.2023.1289945/full; https://doaj.org/toc/2296-2565

Access URL: https://doaj.org/article/d1e899771f6c4e9c99f8298eee7cfd8c

Computational prediction of inter-species relationships through omics data analysis and machine learning

Authors: Diogo Manuel Carvalho Leite, Xavier Brochet, Grégory Resch, Yok-Ai Que, Aitana Neves, Carlos Peña-Reyes

Source: BMC Bioinformatics, Vol 19, Iss S14, Pp 151-159 (2018)

Subject Terms: Health, Machine learning, Phage-therapy, Supervised learning, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-018-2388-7; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/247e50dca2c64f40b60037ccac4a390e

Cellular hallmarks reveal restricted aerobic metabolism at thermal limits

Authors: Aitana Neves, Coralie Busso, Pierre Gönczy

Source: eLife, Vol 4 (2015)

Subject Terms: thermal limit, aerobic metabolism, cellular hallmark, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/04810; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/53138c394a4048d2877a17fd343b1a61

Determinants of brain cell metabolic phenotypes and energy substrate utilization unraveled with a modeling approach.

Authors: Aitana Neves, Robert Costalat, Luc Pellerin

Source: PLoS Computational Biology, Vol 8, Iss 9, p e1002686 (2012)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3441424?pdf=render; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/269eee73c51c4333b7853cb56bbf25ea