Whole proteome-integrated and vaccinomics-based next generation mRNA vaccine design against Pseudomonas aeruginosa-A hierarchical subtractive proteomics approach

Authors: Aiman, Sara ^{a, b, 1}, Ahmad, Abbas ^{c, 1}, Malik, Abdul ^d, Chen, Rui ^a, Hanif, Muhammad Farhan ^e, Khan, Azmat Ali ^f, Ansari, Mushtaq Ahmed ^g, Farrukh, Samavia ^h, Xu, Guangxian ^a, Shahab, Muhammad ^{i, ⁎}, Huang, Kaisong ^{a, b, ⁎}

Source: In International Journal of Biological Macromolecules May 2025 309 Part 1

Immunoinformatics-based potential multi-peptide vaccine designing against Jamestown Canyon Virus (JCV) capable of eliciting cellular and humoral immune responses

Authors: Shahab, Muhammad ^a, Aiman, Sara ^b, Alshammari, Abdulrahman ^c, Alasmari, Abdullah F. ^c, Alharbi, Metab ^c, Khan, Abbas ^{d, e, ⁎}, Wei, Dong-Qing ^d, Zheng, Guojun ^{a, ⁎}

Source: In International Journal of Biological Macromolecules 31 December 2023 253 Part 2

Immunoinformatics-based multi-epitope vaccine design for the re-emerging monkeypox virus

Authors: Farzan, Mahour ^{a, b, 1}, Farzan, Mahan ^{a, b, 1}, Mirzaei, Yousef ^c, Aiman, Sara ^d, Azadegan-Dehkordi, Fatemeh ^{e, ⁎}, Bagheri, Nader ^{f, ⁎⁎}

Source: In International Immunopharmacology October 2023 123

Core-genome-mediated promising alternative drug and multi-epitope vaccine targets prioritization against infectious Clostridium difficile.

Authors: Aiman, Sara¹ (AUTHOR), Farooq, Qurrat ul Ain¹ (AUTHOR), Han, Zhongjie¹ (AUTHOR), Aslam, Muneeba² (AUTHOR), Zhang, Jilong¹ (AUTHOR), Khan, Asifullah² (AUTHOR) asif@awkum.edu.pk, Ahmad, Abbas³ (AUTHOR), Li, Chunhua¹ (AUTHOR) asif@awkum.edu.pk, Ali, Yasir⁴ (AUTHOR) asif@awkum.edu.pk

Source: PLoS ONE. 1/19/2024, Vol. 19 Issue 1, p1-26. 26p.

Subject Terms: *CLOSTRIDIUM diseases, *CLOSTRIDIOIDES difficile, *DRUG target, *DRUG resistance in microorganisms, *VACCINE effectiveness

Vaccinomics-aided next-generation novel multi-epitope-based vaccine engineering against multidrug resistant Shigella Sonnei: Immunoinformatics and chemoinformatics approaches.

Authors: Aiman, Sara¹ (AUTHOR), Ahmad, Abbas^2,3 (AUTHOR), Khan, Asifullah³ (AUTHOR) asif@awkum.edu.pk, Ali, Yasir^4,5 (AUTHOR) asif@awkum.edu.pk, Malik, Abdul⁶ (AUTHOR), Alkholief, Musaed⁶ (AUTHOR), Akhtar, Suhail⁷ (AUTHOR), Khan, Raham Sher² (AUTHOR), Li, Chunhua¹ (AUTHOR) asif@awkum.edu.pk, Jalil, Fazal² (AUTHOR)

Source: PLoS ONE. 11/22/2023, Vol. 18 Issue 11, p1-25. 25p.

Subject Terms: *ESCHERICHIA coli, *SHIGELLA, *CHEMINFORMATICS, *AMINO acid sequence, *HUMAN microbiota

Geographic Terms: MIDDLE East, ASIA

A comprehensive protein interaction map and druggability investigation prioritized dengue virus NS1 protein as promising therapeutic candidate.

Authors: Farooq, Qurrat ul Ain¹ (AUTHOR), Aiman, Sara¹ (AUTHOR), Ali, Yasir^2,3 (AUTHOR) chunhuali@bjut.edu.cn, Shaukat, Zeeshan⁴ (AUTHOR), Khan, Asifullah⁵ (AUTHOR), Samad, Abdus⁵ (AUTHOR), Wadood, Abdul⁵ (AUTHOR), Li, Chunhua¹ (AUTHOR) chunhuali@bjut.edu.cn

Source: PLoS ONE. 7/27/2023, Vol. 18 Issue 7, p1-25. 25p.

Subject Terms: *DENGUE viruses, *VIRAL proteins, *INTERMOLECULAR interactions, *VIRUS diseases, *MOLECULAR dynamics, *PROTEIN-protein interactions

Immunoinformatic-guided novel mRNA vaccine designing to elicit immunogenic responses against the endemic Monkeypox virus.

Authors: Aiman, Sara, Ali, Yasir, Malik, Abdul, Alkholief, Musaed, Ahmad, Abbas, Akhtar, Suhail, Ali, Sajid, Khan, Asifullah, Li, Chunhua, Shams, Sulaiman

Source: Journal of Biomolecular Structure & Dynamics; Aug2024, Vol. 42 Issue 12, p6292-6306, 15p

The in silico identification of small molecules for protein-protein interaction inhibition in AKAP-Lbc–RhoA signaling complex

Authors: Khan, Asifullah, Munir, Mehwish, Aiman, Sara, Wadood, Abdul, Khan, Arif-ullah

Source: In Computational Biology and Chemistry April 2017 67:84-91

Core genome mediated potential vaccine targets prioritization against Clostridium difficile via reverse vaccinology - an immuno-informatics approach.

Authors: Aiman, Sara¹, Ali, Fawad^2,3, Zia, Asad², Aslam, Muneeba², Zhongjie Han¹, Farooq, Qurat ul Ain¹, Shams, Sulaiman², Khan, Asifullah² asif@awkum.edu.pk, Chunhua Li¹ chunhuali@bjut.edu.cn

Source: Journal of Biological Research. 2022, Vol. 29, p1-13. 13p.

Subject Terms: *CLOSTRIDIOIDES difficile, *WHOLE genome sequencing, *VACCINE effectiveness, *T cells, *GUT microbiome, *MULTIDRUG resistance

A systems biology-driven approach to construct a comprehensive protein interaction network of influenza A virus with its host

Authors: Farooq, Qurat ul Ain, Shaukat, Zeeshan, Aiman, Sara, Zhou, Tong, Li, Chunhua

Source: BMC infectious diseases. 20(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171698475.0x000001&indx=1&recIds=ETOCvdc_100171698475.0x000001

Inferring Virus-Host relationship between HPV and its host Homo sapiens using protein interaction network

Authors: Farooq, Qurat ul Ain, Shaukat, Zeeshan, Zhou, Tong, Aiman, Sara, Gong, Weikang, Li, Chunhua

Source: Scientific reports. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174632311.0x000001&indx=1&recIds=ETOCvdc_100174632311.0x000001

Vaccinomics-based next- generation multi-epitope chimeric vaccine models prediction against Leishmania tropica - a hierarchical subtractive proteomics and immunoinformatics approach.

Authors: Aiman, Sara, Ahmad, Abbas, Khan, Azmat Ali, Alanazi, Amer M., Samad, Abdus, Ali, Syed Luqman, Chunhua Li, Zhiguang Ren, Khan, Asifullah, Khattak, Saadullah

Source: Frontiers in Immunology; 2023, p01-19, 19p

Subject Terms: ESCHERICHIA coli, PROTEOMICS, PREDICTION models, LEISHMANIA, VACCINES, WHEAT breeding

Annotation of Potential Vaccine Targets and Designing of mRNA-Based Multi-Epitope Vaccine against Lumpy Skin Disease Virus via Reverse Vaccinology and Agent-Based Modeling.

Authors: Kakakhel, Sehrish, Ahmad, Abbas, Mahdi, Wael A., Alshehri, Sultan, Aiman, Sara, Begum, Sara, Shams, Sulaiman, Kamal, Mehnaz, Imran, Mohd., Shakeel, Faiyaz, Khan, Asifullah

Source: Bioengineering (Basel); Apr2023, Vol. 10 Issue 4, p430, 16p

Subject Terms: LUMPY skin disease, VIRUS diseases, MESSENGER RNA, CATTLE diseases, VACCINES

Comparative Proteomics and Genome-Wide Druggability Analyses Prioritized Promising Therapeutic Targets against Drug-Resistant Leishmania tropica.

Authors: Aiman, Sara, Alzahrani, A. Khuzaim, Ali, Fawad, Abida, Imran, Mohd., Kamal, Mehnaz, Usman, Muhammad, Thabet, Hamdy Khamees, Li, Chunhua, Khan, Asifullah

Source: Microorganisms; Jan2023, Vol. 11 Issue 1, p228, 14p

Subject Terms: LEISHMANIASIS, DRUG target, CUTANEOUS leishmaniasis, PROTEOMICS, DATA libraries, LEISHMANIA

Multi-epitope chimeric vaccine design against emerging Monkeypox virus via reverse vaccinology techniques-a bioinformatics and immunoinformatics approach.

Authors: Aiman, Sara, Alhamhoom, Yahya, Ali, Fawad, Rahman, Noor, Rastrelli, Luca, Khan, Asifullah, Farooq, Qurat ul Ain, Ahmed, Abbas, Khan, Asif, Chunhua Li

Source: Frontiers in Immunology; 8/25/2022, Vol. 13, p1-17, 17p

Subject Terms: MONKEYPOX, BACTERIAL vaccines, VACCINE effectiveness, VACCINES, VACCINE development

Company/Entity: WORLD Health Organization

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