Dynamical model-based experiment design for drug repositioning

Authors: Aalto, Atte, Mi, La, Blanco-Mora, Diego A., Goncalves, Jorge

Subject Terms: Quantitative Biology - Molecular Networks, Mathematics - Optimization and Control

Access URL: http://arxiv.org/abs/2504.00488

Linear system identification from ensemble snapshot observations

Authors: Aalto, Atte, Goncalves, Jorge

Source: 2019 IEEE 58th Conference on Decision and Control (CDC) Decision and Control (CDC), 2019 IEEE 58th Conference on. :7554-7559 Dec, 2019

Relation: 2019 IEEE 58th Conference on Decision and Control (CDC)

A multifactorial evaluation framework for gene regulatory network reconstruction

Authors: Mombaerts, Laurent, Aalto, Atte, Markdahl, Johan, Goncalves, Jorge

Subject Terms: Quantitative Biology - Molecular Networks, Mathematics - Dynamical Systems, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1906.12243

Continuous time Gaussian process dynamical models in gene regulatory network inference

Authors: Aalto, Atte, Viitasaari, Lauri, Ilmonen, Pauliina, Mombaerts, Laurent, Goncalves, Jorge

Source: "Gene regulatory network inference from sparsely sampled noisy data", Nature Communications 11: 3493 (2020)

Subject Terms: Mathematics - Optimization and Control, Mathematics - Statistics Theory, Quantitative Biology - Molecular Networks

Access URL: http://arxiv.org/abs/1808.08161

Bayesian variable selection in linear dynamical systems

Authors: Aalto, Atte, Goncalves, Jorge

Subject Terms: Statistics - Methodology, Mathematics - Optimization and Control, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1802.05753

Linear system identifiability from single-cell data

Authors: Aalto, Atte, Lamoline, François, Gonçalves, Jorge

Source: In Systems & Control Letters July 2022 165

Model-based assessment of COVID-19 epidemic dynamics by wastewater analysis

Authors: Proverbio, Daniele, Kemp, Françoise, Magni, Stefano, Ogorzaly, Leslie, Cauchie, Henry-Michel, Gonçalves, Jorge, Skupin, Alexander, Aalto, Atte

Source: In Science of the Total Environment 25 June 2022 827

Iterative observer-based state and parameter estimation for linear systems

Authors: Aalto, Atte

Subject Terms: Mathematics - Optimization and Control, 93B30, 35R30, 93C05

Access URL: http://arxiv.org/abs/1609.06959

Modelling COVID-19 dynamics and potential for herd immunity by vaccination in Austria, Luxembourg and Sweden

Authors: Kemp, Françoise, Proverbio, Daniele, Aalto, Atte, Mombaerts, Laurent, Fouquier d’Hérouël, Aymeric, Husch, Andreas, Ley, Christophe, Gonçalves, Jorge, Skupin, Alexander, Magni, Stefano

Source: In Journal of Theoretical Biology 7 December 2021 530

COVID-19 crisis management in Luxembourg: Insights from an epidemionomic approach

Authors: Burzyński, Michał, Machado, Joël, Aalto, Atte, Beine, Michel, Goncalves, Jorge, Haas, Tom, Kemp, Françoise, Magni, Stefano, Mombaerts, Laurent, Picard, Pierre, Proverbio, Daniele, Skupin, Alexander, Docquier, Frédéric ^*

Source: In Economics and Human Biology December 2021 43

Convergence of discrete-time Kalman filter estimate to continuous-time estimate for systems with unbounded observation

Authors: Aalto, Atte

Subject Terms: Mathematics - Optimization and Control

Access URL: http://arxiv.org/abs/1512.02473

Output error minimizing back and forth nudging method for initial state recovery

Authors: Aalto, Atte

Source: Systems and Control Letters, Elsevier, 2016, 94, pp.111-117

Subject Terms: Mathematics - Optimization and Control

Access URL: http://arxiv.org/abs/1510.04528

Modal locking between vocal fold and vocal tract oscillations: Simulations in time domain

Authors: Aalto, Atte, Murtola, Tiina, Malinen, Jarmo, Aalto, Daniel, Vainio, Martti

Subject Terms: Physics - Fluid Dynamics, 76Q05, 92C05, 93C20

Access URL: http://arxiv.org/abs/1506.01395

SARS-CoV-2 transmission risk from asymptomatic carriers: Results from a mass screening programme in Luxembourg

Authors: Wilmes, Paul, Zimmer, Jacques, Schulz, Jasmin, Glod, Frank, Veiber, Lisa, Mombaerts, Laurent, Rodrigues, Bruno, Aalto, Atte, Pastore, Jessica, Snoeck, Chantal J., Ollert, Markus, Fagherazzi, Guy, Mossong, Joël, Goncalves, Jorge, Skupin, Alexander, Nehrbass, Ulf

Source: In The Lancet Regional Health - Europe May 2021 4

Convergence of discrete time Kalman filter estimate to continuous time estimate

Authors: Aalto, Atte

Subject Terms: Mathematics - Optimization and Control, 93E11, 93C57

Access URL: http://arxiv.org/abs/1408.1275

Spatial discretization error in Kalman filtering for discrete-time infinite dimensional systems

Authors: Aalto, Atte

Subject Terms: Mathematics - Optimization and Control, 93E11, 93E25

Access URL: http://arxiv.org/abs/1406.7160

Acoustic wave guides as infinite-dimensional dynamical systems

Authors: Aalto, Atte, Lukkari, Teemu, Malinen, Jarmo

Subject Terms: Mathematics - Dynamical Systems, Mathematics - Analysis of PDEs, Primary 35L05, secondary 35L20, 93C20, 47N70

Access URL: http://arxiv.org/abs/1211.7000

Wave Propagation in Networks: a System Theoretic Approach

Authors: Aalto, Atte, Malinen, Jarmo

Source: In IFAC Proceedings Volumes January 2011 44(1):8854-8859

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