Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture

Authors: McGowen, Michael R., Tsagkogeorga, Georgia, Álvarez-Carretero, Sandra, dos Reis, Mario, Struebig, Monika, Deaville, Robert, Jepson, Paul D., Jarman, Simon, Polanowski, Andrea, Morin, Phillip A., Rossiter, Stephen J.

Source: Systematic Biology, 2020 May 01. 69(3), 479-501.

Access URL: https://www.jstor.org/stable/26939586

Bayesian Estimation of Species Divergence Times Using Correlated Quantitative Characters

Authors: Álvarez-Carretero, Sandra, Goswami, Anjali, Yang, Ziheng, dos Reis, Mario

Source: Systematic Biology, 2019 Nov 01. 68(6), 967-986.

Access URL: https://www.jstor.org/stable/26842016

The nature of the last universal common ancestor and its impact on the early Earth system.

Authors: Moody, Edmund R. R., Álvarez-Carretero, Sandra, Mahendrarajah, Tara A., Clark, James W., Betts, Holly C., Dombrowski, Nina, Szánthó, Lénárd L., Boyle, Richard A., Daines, Stuart, Chen, Xi, Lane, Nick, Yang, Ziheng, Shields, Graham A., Szöllősi, Gergely J., Spang, Anja, Pisani, Davide, Williams, Tom A., Lenton, Timothy M., Donoghue, Philip C. J.

Source: Nature Ecology & Evolution; Sep2024, Vol. 8 Issue 9, p1654-1666, 13p

The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli

Authors: Joffre, Enrique, Nicklasson, Matilda, Álvarez-Carretero, Sandra, Xiao, Xue, Sun, Lei, Nookaew, Intawat, Zhu, Baoli, Sjöling, Åsa

Source: Scientific reports. 9(1):1-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100103869361.0x000001&indx=1&recIds=ETOCvdc_100103869361.0x000001

An Evaluation of Different Partitioning Strategies for Bayesian Estimation of Species Divergence Times

Authors: Angelis, Konstantinos, Álvarez-Carretero, Sandra, Dos Reis, Mario, Yang, Ziheng

Source: Systematic Biology, 2018 Jan 01. 67(1), 61-77.

Access URL: https://www.jstor.org/stable/26581918

VSpipe-GUI, an Interactive Graphical User Interface for Virtual Screening and Hit Selection.

Authors: Hussain, Rashid, Hackett, Andrew Scott, Álvarez-Carretero, Sandra, Tabernero, Lydia

Source: International Journal of Molecular Sciences; Feb2024, Vol. 25 Issue 4, p2002, 16p

Subject Terms: GRAPHICAL user interfaces, PYTHON programming language, HEPATITIS C virus, CHEMICAL libraries, SPATIAL filters

Beginner's Guide on the Use of PAML to Detect Positive Selection.

Authors: Álvarez-Carretero, Sandra, Kapli, Paschalia, Yang, Ziheng

Source: Molecular Biology & Evolution; Apr2023, Vol. 40 Issue 4, p1-18, 18p

Subject Terms: BIOLOGICAL evolution, AMINO acid residues, NUCLEOTIDE sequencing, PHYLOGENY

VSpipe, an Integrated Resource for Virtual Screening and Hit Selection: Applications to Protein Tyrosine Phospahatase Inhibition.

Authors: Álvarez-Carretero, Sandra^1,2 sandra.ac93@gmail.com, Pavlopoulou, Niki^1,3, Adams, James¹, Gilsenan, Jane¹, Tabernero, Lydia¹ lydia.tabernero@manchester.ac.uk

Source: Molecules. Feb2018, Vol. 23 Issue 2, p353. 14p. 4 Color Photographs, 2 Diagrams, 1 Chart, 4 Graphs.

Subject Terms: *PROTEIN-tyrosine phosphatase, *DRUG development, *BINDING sites, *LIGANDS (Biochemistry), *PHOSPHOPROTEIN phosphatases

A species-level timeline of mammal evolution integrating phylogenomic data.

Authors: Álvarez-Carretero, Sandra, Tamuri, Asif U., Battini, Matteo, Nascimento, Fabrícia F., Carlisle, Emily, Asher, Robert J., Yang, Ziheng, Donoghue, Philip C. J., dos Reis, Mario

Source: Nature; Feb2022, Vol. 602 Issue 7896, p263-267, 5p

Dire wolves were the last of an ancient New World canid lineage.

Authors: Mouton, Alice, Perri, Angela R., Mitchell, Kieren J., Álvarez-Carretero, Sandra, Jamieson, Alexandra, Meachen, Julie, Lin, Audrey T., Hulme-Beaman, Ardern

Source: Nature; Mar2021, Vol. 591 Issue 7848, p87-91, 5p, 3 Graphs

Dire wolves were the last of an ancient New World canid lineage

Authors: Perri, Angela R., Mitchell, Kieren J., Mouton, Alice, Álvarez-Carretero, Sandra, Hulme-Beaman, Ardern, Haile, James, Jamieson, Alexandra, Meachen, Julie, Lin, Audrey T., Schubert, Blaine W., Ameen, Carly, Antipina, Ekaterina E., Bover, Pere, Brace, Selina, Carmagnini, Alberto, Carøe, Christian, Samaniego Castruita, Jose A., Chatters, James C., Dobney, Keith, dos Reis, Mario, Evin, Allowen, Gaubert, Philippe, Gopalakrishnan, Shyam, Gower, Graham, Heiniger, Holly, Helgen, Kristofer M., Kapp, Josh, Kosintsev, Pavel A., Linderholm, Anna, Ozga, Andrew T., Presslee, Samantha, Salis, Alexander T., Saremi, Nedda F., Shew, Colin, Skerry, Katherine, Taranenko, Dmitry E., Thompson, Mary, Sablin, Mikhail V., Kuzmin, Yaroslav V., Collins, Matthew J., Sinding, Mikkel-Holger S., Gilbert, M. Thomas P., Stone, Anne C., Shapiro, Beth, Van Valkenburgh, Blaire, Wayne, Robert K., Larson, Greger, Cooper, Alan, Frantz, Laurent A. F.

Source: Nature; 20210101, Issue: Preprints p1-5, 5p

Identification of Functional and Druggable Sites in Aspergillus fumigatus Essential Phosphatases by Virtual Screening.

Authors: Thornton, Benjamin P., Johns, Anna, Al-Shidhani, Reem, Álvarez-Carretero, Sandra, Storer, Isabelle S. R., Bromley, Michael J., Tabernero, Lydia

Source: International Journal of Molecular Sciences; Sep2019, Vol. 20 Issue 18, p4636-4636, 1p, 3 Diagrams, 3 Charts, 2 Graphs

Subject Terms: ASPERGILLUS fumigatus, PHOSPHATASES, ECHINOCANDINS, LIGAND binding (Biochemistry), PHOSPHOPROTEIN phosphatases, DRUG development, MYCOSES